Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E10
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   4.5  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   4.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   5.9  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.9  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   7.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 231 CHYFHFITLAHHNHTISRKMPLKLHNI 311
           CHY+ F   +H   TISRK  L +  I
Sbjct: 518 CHYYRFFRTSH---TISRKFMLSIEFI 541


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 145 LSITDDNKMAAFCYNQNGDDWNASEF 222
           L IT +N++++   +QN  +WNA  F
Sbjct: 675 LEITPENELSSSLTHQNTGEWNAFIF 700


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 455 LEPKPFKRVNNKKIVRYFSTSKT 387
           ++P  F ++N+K+I+ +   SKT
Sbjct: 233 IDPSSFIKINSKEIIDFLEKSKT 255


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 115 TMQPSQTLGTLSITDDNKMAAFCY---NQNGDDWNASEFTVNVIIFTSLHLRITT 270
           T+ PS     LS+T    +        N+     ++  FT+N +I   LHL+ TT
Sbjct: 563 TIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKSFTMNDLILPPLHLKNTT 617


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 157 DDNKMAAFCYNQNGDDWNASEFTVNVIIFTSLHLRITTTLYHVKCH 294
           D +K A     Q+  + N+S  T    + ++ H+R T+T YHV  H
Sbjct: 603 DVSKAAVSEVKQHESNINSSSATD--FVSSAFHIRPTSTGYHVGIH 646


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 348 RPYFLFIILHLTIYYAILVA 289
           RPY +F+ LH+ ++Y++L A
Sbjct: 4   RPYSVFLFLHI-VFYSLLSA 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,110
Number of Sequences: 5004
Number of extensions: 31752
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)