Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E10
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   2.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 371 RLWSGHVVVLIFYSLFCI 318
           R   GH+V ++FYS+  I
Sbjct: 32  RFNEGHIVSIVFYSVLMI 49


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 367 NRAKHT*VFDVEKYRTIFLLLTRLKGFGS 453
           N  +H+     +KY  + LL + + GFG+
Sbjct: 394 NELRHSRPVPAKKYDCVTLLFSGIVGFGA 422


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 367 NRAKHT*VFDVEKYRTIFLLLTRLKGFGS 453
           N  +H+     +KY  + LL + + GFG+
Sbjct: 394 NELRHSRPVPAKKYDCVTLLFSGIVGFGA 422


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 399 RKISHYFFIINSFKGFRF 452
           +KI+H+F ++     F+F
Sbjct: 241 KKITHFFDLVRPLIAFKF 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,416
Number of Sequences: 438
Number of extensions: 2274
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)