Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E09
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-10|CAB03395.3|  467|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z81033-3|CAD36479.1|  467|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL023824-1|CAD36497.1|  467|Caenorhabditis elegans Hypothetical ...    29   1.1  
AF487547-1|AAL93258.1|  467|Caenorhabditis elegans ARID DNA bind...    29   1.1  
AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormo...    27   7.9  
AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z81128-10|CAB03395.3|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 221 KRERERERVLQSPPLPFHLPLNETASNFC*SLVNNTFI*VSKKNNL---ENTLSFYSS 385
           +RE    R   S PLPF LP    A++   +++NN    +  +N+L   ENTLS  +S
Sbjct: 289 RREAPGRRTAPSFPLPFQLP---HAASAAATMLNNQLNGLGMRNDLLDDENTLSLQAS 343


>Z81033-3|CAD36479.1|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 221 KRERERERVLQSPPLPFHLPLNETASNFC*SLVNNTFI*VSKKNNL---ENTLSFYSS 385
           +RE    R   S PLPF LP    A++   +++NN    +  +N+L   ENTLS  +S
Sbjct: 289 RREAPGRRTAPSFPLPFQLP---HAASAAATMLNNQLNGLGMRNDLLDDENTLSLQAS 343


>AL023824-1|CAD36497.1|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 221 KRERERERVLQSPPLPFHLPLNETASNFC*SLVNNTFI*VSKKNNL---ENTLSFYSS 385
           +RE    R   S PLPF LP    A++   +++NN    +  +N+L   ENTLS  +S
Sbjct: 289 RREAPGRRTAPSFPLPFQLP---HAASAAATMLNNQLNGLGMRNDLLDDENTLSLQAS 343


>AF487547-1|AAL93258.1|  467|Caenorhabditis elegans ARID DNA binding
           protein CFI-1 protein.
          Length = 467

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 221 KRERERERVLQSPPLPFHLPLNETASNFC*SLVNNTFI*VSKKNNL---ENTLSFYSS 385
           +RE    R   S PLPF LP    A++   +++NN    +  +N+L   ENTLS  +S
Sbjct: 289 RREAPGRRTAPSFPLPFQLP---HAASAAATMLNNQLNGLGMRNDLLDDENTLSLQAS 343


>AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 261 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 123 FSHFSIIRYMIIIINKLVSRCIKKISCR 206
           F   ++ ++  I  NK V  C KKI+CR
Sbjct: 33  FGRTTVDKFRCIANNKCVISCAKKITCR 60


>AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical
           protein C17A2.1 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 123 FSHFSIIRYMIIIINKLVSRCIKKISCR 206
           F   ++ ++  I  NK V  C KKI+CR
Sbjct: 33  FGRTTVDKFRCIANNKCVISCAKKITCR 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,673,670
Number of Sequences: 27780
Number of extensions: 149278
Number of successful extensions: 262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)