Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E08
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.44
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 1.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 4.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 5.4
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 7.2
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 24 9.5
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 24 9.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 24 9.5
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 24 9.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 24 9.5
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.44
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 58 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 165
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 160 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDLKIYL 288
DIV F ++ K + +T+LVD SK +T++ YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 4.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -2
Query: 147 WHFELINVSDGVRLVRVGAAHASVRQ 70
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 202 SYKDLVMPLITQLVDNLKSKQITDLKIYLAGHTSKYP 312
S+K +V PL TQL ++ + ITD++ + T+ +P
Sbjct: 1204 SFKRVVTPLGTQLRKDILNDSITDME-NTSSFTASFP 1239
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 7.2
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -3
Query: 248 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 81
++TN V + I++ S TT S+ + +S +S M+ SAS
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472
Query: 80 ASGSTAGSSPVRASAA 33
+SGS++GSS +SA+
Sbjct: 473 SSGSSSGSSSATSSAS 488
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.2 bits (50), Expect = 9.5
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +1
Query: 178 ETTQSNEQSYKDLVMPLITQLVDNLKSKQITDLKIYLAGHTSKYPYP-ILYDTDLKLKSS 354
+T Q +E S +++ +NL +T+LK LA + P P L + K ++
Sbjct: 142 KTFQLDESSVVKILLRKAKVAQENLPPSIVTELKKQLAPLDLRTPLPQDLLELSCKWHAA 201
Query: 355 KLHFDD--KERYERMPFVKTGCDTFDKYEKNV 444
L +D E Y ++ + + Y KN+
Sbjct: 202 SLVCEDLQPEWYNKLAYWQEELAPLHAYTKNL 233
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 410 PVLTKGIXXXXXXXXXXXLELFSFKSVSYKIG*GYLDVCPA 288
P+LT + L S K V++ + GY +V PA
Sbjct: 306 PILTSDVHSTEEKVLSIIGTLLSRKEVNWTLTAGYFNVYPA 346
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.2 bits (50), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 247 NLKSKQITDLKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYE 387
N+ S TDL+I+ K P +L+D L+ KSSK + + YE
Sbjct: 778 NISSVSSTDLEIW------KTPEGVLWDNVLEKKSSKKLDKNTKDYE 818
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 25 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIV 168
RG+ +AL ++ A++ A R + P +GD+ L V + DIV
Sbjct: 455 RGWLLVALLEIIHALMLAAFCRDKGFEVPSDLGDI-TLYVQERMVDIV 501
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +1
Query: 259 KQITDLKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEK 438
KQI K+ K +L + + KLK +KL+F E + + + D +K
Sbjct: 835 KQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSEDCDLQKK 894
Query: 439 NVID 450
+++
Sbjct: 895 KLLE 898
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,552
Number of Sequences: 5004
Number of extensions: 30639
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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