Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E08
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228...    33   0.11 
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    28   4.0  
01_06_0240 + 27794741-27795466                                         28   4.0  
11_05_0096 - 19029632-19029937,19030376-19031197                       27   5.3  
04_04_0236 + 23825368-23825763,23826229-23828667                       27   5.3  
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890...    27   7.1  
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484...    27   9.3  

>10_08_0824 +
           20821724-20822137,20822457-20822543,20822729-20822829,
           20822917-20822967,20823616-20823790,20823878-20824192,
           20824504-20824707,20824799-20825314,20825400-20825609,
           20826092-20826280,20827254-20827405,20827685-20827837,
           20827925-20828006,20828086-20828475
          Length = 1012

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 175 FETTQSNEQSYKDLVMPLITQLVDNLKSKQITDLKIYL-AGHTSKYPYPILYDTDLKLKS 351
           FET  + E S  D    L+T+++DNL  +     + Y  +  TS Y YP L D +  L  
Sbjct: 540 FETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTSLYNYPSLSDWN-DLNE 598

Query: 352 SKLHFDDKERYE 387
            ++ F+D ER E
Sbjct: 599 VEI-FEDIERRE 609


>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 289 AGHTSKYPYPILYDTDLKLKSSKLHFDD-KERYERMPFVKTGCDTFDKYEKNVI 447
           AG  S  P  I+   D   +++KLHFDD  +RY     +     TF+K  + ++
Sbjct: 300 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKRPREMM 353


>01_06_0240 + 27794741-27795466
          Length = 241

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 58  LPAVLPDACVRCTDADKPHAIGDV 129
           +PA  P A VRCT A KP A G +
Sbjct: 24  IPAATPSAIVRCTAAPKP-ATGSI 46


>11_05_0096 - 19029632-19029937,19030376-19031197
          Length = 375

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 4   RGACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGD 126
           R   D+  G+ A+A    + A  PD  ++CT  D PH + D
Sbjct: 209 RSLVDVGGGHGAVAKA--IAAAFPD--IKCTVMDLPHVVAD 245


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 283 YLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 444
           Y+   T+   +   +DT +KL+S +  +DD   +++ P V +G   F++   NV
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640


>02_03_0143 +
           15685242-15686298,15688167-15688265,15688998-15689072,
           15689309-15689364,15689786-15689875
          Length = 458

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
 Frame = +1

Query: 124 DVYQLKV-PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDLKIYLAGHT 300
           D Y+  + PN Q+D  +S   T +     ++L +      V+  ++K+ T+   +LA   
Sbjct: 184 DDYRCSILPNHQSDFSLSSPDTLTLITRDENLAVAD----VEEWRAKEYTEK--WLAESE 237

Query: 301 SKYPYPILYDTDLKLKSSKLHFDDK-ERYERMPFVK 405
           +KY +PI + T  K++     F  K   ++R+P+ K
Sbjct: 238 TKYAFPINFPTGFKIEKG---FRGKLGNWQRLPYTK 270


>12_01_0591 -
           4835894-4836328,4836343-4837882,4838911-4839050,
           4840051-4840605
          Length = 889

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 180 FEGDDNICLLVWHFELINVSDGVR 109
           FEGDD IC+L     L+ +  G+R
Sbjct: 753 FEGDDGICILAKLPSLVQLDLGIR 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,952,010
Number of Sequences: 37544
Number of extensions: 194863
Number of successful extensions: 523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)