Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E07
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 181 4e-47
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 181 4e-47
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 5.4
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 5.4
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 7.2
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 25 7.2
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 24 9.5
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 24 9.5
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 24 9.5
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 181 bits (441), Expect = 4e-47
Identities = 78/114 (68%), Positives = 101/114 (88%)
Frame = +1
Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 285
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 286 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAK 447
+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN+ H+GN++++++I +A+
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVAR 114
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 181 bits (441), Expect = 4e-47
Identities = 78/114 (68%), Positives = 101/114 (88%)
Frame = +1
Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 285
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 286 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAK 447
+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN+ H+GN++++++I +A+
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVAR 114
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 200 ILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPM 51
I+ + ++ T+ PTHL L SN+ NNK+ N+SKP+
Sbjct: 449 IMDLTQPISSTNAPTHLNEDDLNQFTSNISSSSKPRKDNNKTA-NSSKPI 497
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 125 GSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGVQPSK 18
GS + G+VL+N K + LD+ VQ K
Sbjct: 92 GSQVAGLVLSNRSGLKGREPKKSQLGLDVLAVQKKK 127
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 138 NRQLKMCWWRSRCYVLLGS*NRSPWSLPKK 227
NR C R Y+ G NRSPW++ +K
Sbjct: 286 NRLPMHCRDHWRDYIQPGEINRSPWTIQEK 315
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 7.2
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +2
Query: 185 PWLLKSVPLVSPQ 223
PW +K++PLV+P+
Sbjct: 462 PWNIKNIPLVTPE 474
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 213 TKGTDFRSQGGRSTDFSTN 157
T G D S GGR+ D+ST+
Sbjct: 118 TGGNDSYSSGGRNEDYSTS 136
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 146 LTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 42
L++ I GG+V C + + N K NLD
Sbjct: 693 LSLGIDAAKRAGGVVEATMCYSGDMLNPKKKYNLD 727
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.2 bits (50), Expect = 9.5
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = +1
Query: 166 EVGATSSLAPKIGPLGLSPKK---VGDDIAKATSDWKGLKITVQLIVQNRQ--AQIS-VV 327
E+ A +++ P++ P +PKK + ++ ++ ++ + + + N + A S V
Sbjct: 155 EIAAPANIEPEVAPTTKTPKKRAALSNEEKQSLKKFQSAMLPMLDNISNHRFGAPFSHPV 214
Query: 328 PSAAALIIRALKEPPRDRKKQKNIKHNGNITMED 429
A +L P+D + KN+ GNIT D
Sbjct: 215 NRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVD 248
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 209 RGPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 42
R LG+K+ + + PP H L+ + + S G + N+S ++S M D
Sbjct: 268 RSVSLGSKDYLKSSHPPVHKTLSQSVLVLSKDGNASSSGGTENQSANSSSSLMEKD 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,449
Number of Sequences: 5004
Number of extensions: 32392
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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