Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E07
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   193   6e-50
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   2.8  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  193 bits (470), Expect = 6e-50
 Identities = 86/115 (74%), Positives = 104/115 (90%)
 Frame = +1

Query: 106 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 285
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 286 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKI 450
           +L +QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG++T++ +I IA+I
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARI 115


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 422 IVIFPLCLMFFCFLRS 375
           +VIF +CL+ FCFLR+
Sbjct: 613 LVIFLMCLLVFCFLRN 628


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -1

Query: 245 AMSSPTFFGERPRGPILGAKEDVAPTSPPTHL--KLTILISLGSNLGGIVLTNYCNNKSL 72
           A S P     +   P   + +D  PTSPP  +   LT  +    +    +  +Y     L
Sbjct: 630 ATSQPAPLPCKSANPTEDSSQDAPPTSPPPRISDSLTAFLEAQQDFNDYIDAHYKEKTQL 689

Query: 71  YNNSKPMNLDIKGVQPSK 18
                 +NL+I G+ P +
Sbjct: 690 LK----VNLNIHGMSPER 703


>Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 449 ILAMPMTSSIVIFPLCLMFF 390
           +L +PM SS+++ P C +F+
Sbjct: 79  VLVVPMASSLILGPFCSIFY 98


>Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 449 ILAMPMTSSIVIFPLCLMFF 390
           +L +PM SS+++ P C +F+
Sbjct: 79  VLVVPMASSLILGPFCSIFY 98


>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 147 LKMCWWRSRCYVLLGS*N 200
           LK+C+W S C V+L S N
Sbjct: 47  LKICFWDSNCLVILDSEN 64


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKG 270
           VGG VGATSS AP  G        V DD    TS  KG
Sbjct: 42  VGGSVGATSSAAPSGG--------VFDDSQSTTSTRKG 71


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKG 270
           VGG VGATSS AP  G        V DD    TS  KG
Sbjct: 32  VGGSVGATSSAAPSGG--------VFDDSQSTTSTRKG 61


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKG 270
           VGG VGATSS AP  G        V DD    TS  KG
Sbjct: 32  VGGSVGATSSAAPSGG--------VFDDSQSTTSTRKG 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,266
Number of Sequences: 27780
Number of extensions: 188423
Number of successful extensions: 508
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)