Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E07
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.29 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   2.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   3.6  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   4.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.3  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 296 TINWTVILRPFQSLVALAMSSPTFFGERPRGPILG 192
           +I   VIL  F  + AL++S P  FG    GP  G
Sbjct: 11  SIRHAVILASFVWIYALSLSLPPLFGWGSYGPEAG 45


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 452 IILAMPMTSSIVIFPLCLMFFCFLRSR 372
           ++ A    SS VIF +  + F FLR+R
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTR 32


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 452 IILAMPMTSSIVIFPLCLMFFCFLRSR 372
           ++ A    SS VIF +  + F FLR+R
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTR 32


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 128 LGSNLGGIVLTNYCNNKSLYNNSK 57
           LG+N+  +++   C N    NN++
Sbjct: 570 LGANVNDLIMNTRCANSDNQNNNQ 593


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 140 ILISLGSNLGGIVLTNYCNNKSLYNN 63
           I+ SL +N       NY NN + YNN
Sbjct: 314 IISSLSNNYKYSNYNNYNNNYNNYNN 339


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 140 ILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLD 42
           I+ SL +N       NY NN + YN     N++
Sbjct: 81  IISSLSNNYNYSNYNNYNNNYNNYNKKLYYNIN 113


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 315 LRLSVLHYQLDRDLETLPVTSGFSD 241
           L +++LH    +DL   P+T  F D
Sbjct: 129 LSVAILHRPDTKDLPVPPLTEVFPD 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,580
Number of Sequences: 438
Number of extensions: 2684
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)