Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E03
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    27   2.0  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   3.4  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   6.0  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   7.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.9  

>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 LTFYYNQNQIQNQLELYRELINVPNCWAVIQPLLCA 391
           +  +Y  + +QN     + L +VPNC +V++  LCA
Sbjct: 1   MQLHYVFSHLQNSFRARKSLASVPNCNSVLE--LCA 34


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 INGTPNYRLIKPDKSTQWF 175
           ++G   Y LIKP+K + WF
Sbjct: 477 LHGGHYYALIKPEKDSNWF 495


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 239 TCLGSKLPYDKTSIHLTFYYNQNQIQNQLE 328
           +C+GS + Y  T   LT  Y+ NQI   LE
Sbjct: 17  SCIGSVIAYSSTD--LTTMYDWNQIIKPLE 44


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 119 INGTPNYRLIKPDKSTQWFPEREIKLDSCVRGARCEQLNATCL 247
           I  TPN ++I      QW  +++++ D+    A  E+LNA  L
Sbjct: 308 IKHTPNSKIINQISLQQWVKQKKVQ-DAWRTIAEREKLNAHAL 349


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 203 CVRGARCEQLNATCLGSKLPYDKTSIHLTFYYNQNQIQNQLELYRELINV 352
           C    R  +L    L  +  +D+    LTFYY+  Q  +  EL R+L  V
Sbjct: 672 CQAKVRQRKLPMEVLDGEYQWDRKK--LTFYYHAKQRIDFRELVRDLFKV 719


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/69 (21%), Positives = 37/69 (53%)
 Frame = +2

Query: 146 IKPDKSTQWFPEREIKLDSCVRGARCEQLNATCLGSKLPYDKTSIHLTFYYNQNQIQNQL 325
           ++  ++ + F ER   L++ +   + E+     L +++  DK++  + + Y   Q+QN+L
Sbjct: 238 VEQSQNVKVFTERIRFLENALEKVQREK---DSLSTEMEEDKSNKEVDYEYEIRQLQNRL 294

Query: 326 ELYRELINV 352
           +   E ++V
Sbjct: 295 DELSEELDV 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,470
Number of Sequences: 5004
Number of extensions: 43735
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)