Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E03
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141...    28   4.5  
11_03_0009 - 8907870-8907948,8908211-8908317,8908457-8908672,891...    27   7.9  
02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707...    27   7.9  

>12_01_0191 +
           1413287-1413346,1413504-1413632,1416819-1416998,
           1417747-1417938,1418533-1418673,1418785-1418912,
           1419088-1419262,1419664-1419852,1420628-1420749,
           1420829-1420874
          Length = 453

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  DTGGDKNS-ISDLGYNVTDRLEIINGTPNYRLIKPDKSTQWFPEREIKLDSCVRGAR 220
           DT GD  S I+D+ + V D  +  N +PN      + ST W P   + L+SC   AR
Sbjct: 340 DTFGDPPSWIADISW-VPDMWKTYNYSPN------NNSTLWTPRYTLDLNSCSHFAR 389


>11_03_0009 -
           8907870-8907948,8908211-8908317,8908457-8908672,
           8910810-8911490,8911656-8911901
          Length = 442

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 372 YSPYFALRLCRNVKIYLDGTWFICRHNEMCKITME 476
           YS YF++RL       +DG W+     + C  T++
Sbjct: 330 YSYYFSIRLSLPEAFVVDGKWYSSFQLQSCHYTIQ 364


>02_05_1136 +
           34369994-34370312,34370398-34370550,34370648-34370745,
           34371563-34371784
          Length = 263

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 148 YQSIVRCPINDFKSISDIVTQIGYRIFVSTCVE 50
           YQ+IVR P ++F  I   ++ IG  + +S   E
Sbjct: 133 YQAIVRMPSSEFSRICKDLSSIGDTVIISVTKE 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,001
Number of Sequences: 37544
Number of extensions: 256620
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)