Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E03
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical p...    29   2.3  
AF022971-4|AAG23982.2|  579|Caenorhabditis elegans Hypothetical ...    29   2.3  
AB007815-1|BAA28351.1|  579|Caenorhabditis elegans matrix metall...    29   2.3  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   4.1  
AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain famil...    27   9.4  

>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 200 SCV-RGARCEQLNATCLGSKLPYDKTSIHLTFYY 298
           SC+ R  RC   N T   S++P+D T ++L   Y
Sbjct: 682 SCLDRVVRCSNKNLTSFPSRIPFDTTELYLDANY 715


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 200 SCV-RGARCEQLNATCLGSKLPYDKTSIHLTFYY 298
           SC+ R  RC   N T   S++P+D T ++L   Y
Sbjct: 682 SCLDRVVRCSNKNLTSFPSRIPFDTTELYLDANY 715


>Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 119 INGTPNYRLIKPDKSTQWFPER 184
           +N  P+Y+  +PD S+ W PER
Sbjct: 374 LNAIPHYQSYQPDWSSSWKPER 395


>Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical
           protein T26F2.1 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 119 INGTPNYRLIKPDKSTQWFPER 184
           +N  P+Y+  +PD S+ W PER
Sbjct: 374 LNAIPHYQSYQPDWSSSWKPER 395


>Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 119 INGTPNYRLIKPDKSTQWFPER 184
           +N  P+Y+  +PD S+ W PER
Sbjct: 374 LNAIPHYQSYQPDWSSSWKPER 395


>AF022971-4|AAG23982.2|  579|Caenorhabditis elegans Hypothetical
           protein C31B8.8 protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  SSICHASQFDTGGDKNSISDLGYNVTDRLEIING 127
           S+I    Q D+G  K   SDLG++V+  L  ING
Sbjct: 467 SNIRQIFQMDSGFPKTLPSDLGFSVSGALRWING 500


>AB007815-1|BAA28351.1|  579|Caenorhabditis elegans matrix
           metalloproteinase protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  SSICHASQFDTGGDKNSISDLGYNVTDRLEIING 127
           S+I    Q D+G  K   SDLG++V+  L  ING
Sbjct: 467 SNIRQIFQMDSGFPKTLPSDLGFSVSGALRWING 500


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 260 PYDKTSIHLTFYYNQNQIQNQ 322
           PY  T+ + T Y NQNQIQNQ
Sbjct: 500 PYCYTNQNPTPYQNQNQIQNQ 520


>AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain family
           protein 6 protein.
          Length = 790

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 20  LISSICHASQFDTGGDKNSISDLGYNVTDRL 112
           +I ++   + F+ GG+ NS+S +G  V D +
Sbjct: 92  IIGALAGNAMFNLGGENNSLSSIGKVVLDNI 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,783,403
Number of Sequences: 27780
Number of extensions: 244574
Number of successful extensions: 588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)