Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E03
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    28   0.060
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.24 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.24 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    26   0.24 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.98 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.1  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 0.060
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 296 YNQNQIQNQLELYRELINVPNCWAVIQ-PLLCATFMPK 406
           YN N   N  +LY  +IN+      +  P+ C  F P+
Sbjct: 341 YNNNNYNNYKKLYYNIINIEQIPVPVPVPIYCGNFPPR 378


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 293 YYNQNQIQNQLELYRELINVPNCWAVIQ-PLLCATFMPK 406
           Y N N   N  +LY  +IN+      +  P+ C  F P+
Sbjct: 311 YKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGNFPPR 349


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 293 YYNQNQIQNQLELYRELINVPNCWAVIQ-PLLCATFMPK 406
           Y N N   N  +LY  +IN+      +  P+ C  F P+
Sbjct: 322 YKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGNFPPR 360


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 296 YNQNQIQNQLELYRELINVPNCWAVIQ-PLLCATFMPK 406
           YN N   N  +LY  +IN+      +  P+ C  F P+
Sbjct: 343 YNNNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPR 380


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 193 FDFSFWEPLRTFVWFYQSIVRCPINDFKSISD 98
           F FS+  P+   +++Y  IV   +N  K++ +
Sbjct: 216 FTFSYCIPMILIIYYYSQIVSHVVNHEKALRE 247


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 118 DFKSISDIVTQIGYRIF 68
           D   +SD+VT++ Y +F
Sbjct: 461 DSNFVSDVVTKLRYEVF 477


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 118 DFKSISDIVTQIGYRIF 68
           D   +SD+VT++ Y +F
Sbjct: 429 DSNFVSDVVTKLRYEVF 445


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 184 SFWEPLRTFVWFYQSIVRCPINDFKSIS 101
           SF+ P+   ++FY  I    ++  K+I+
Sbjct: 255 SFYIPMLVMLFFYWRIYNAAVSTTKAIN 282


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 255 LDPKHVALSCSQ 220
           LDPK +AL C +
Sbjct: 40  LDPKFIALHCQE 51


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = +1

Query: 364 GRYTALTLRYVYAEM*KYTWTGHGLFAVITR 456
           GRY    L  +Y ++    W G G      R
Sbjct: 44  GRYMFTYLHLLYQDVHVMIWIGFGFLMTFLR 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,088
Number of Sequences: 438
Number of extensions: 2987
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)