Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E02
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 29 0.28
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 27 1.5
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 26 3.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 4.5
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 4.5
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 4.5
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 25 5.9
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 25 7.9
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 25 7.9
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 25 7.9
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 29.5 bits (63), Expect = 0.28
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 198 SLTYIVIFANN-NNHSCSMIYDGFKINNYINIFLSRVCNH 314
SL Y+ ++A N N+HS +++ F+ +Y +S NH
Sbjct: 467 SLCYLCLYAQNLNSHSSQSLFELFQSASYPGFLISNDVNH 506
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 155 AHRSRLLSKLKYFTTIQLINQLKTISFSAS 66
AHR LLS KY T+ L+ L S+ +S
Sbjct: 295 AHRKSLLSFSKYVDTMNLLRLLSEASYKSS 324
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -1
Query: 272 YFKTIIYHRTRMIIIVSENDDVSKGRGGAT 183
Y+ +I+HR ++ D GRGG +
Sbjct: 37 YYDGVIFHRVIPDFVIQGGDPTGTGRGGTS 66
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 37 FYMMNVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNYTPAVAPPRP 201
F N C D +K VFS + I + + R A RL+ TP+ P P
Sbjct: 371 FLSFNECASQD-KKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPSTP 424
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 323 SIIMVTHSRKKNINVIIYFKTIIYH-RTRMIIIVSENDDVSK 201
S+I T + KN+N+ I KT++ + +I+ N D SK
Sbjct: 310 SLITYTENLFKNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSK 351
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 276 NYINIFLSRVCNHYYTILR 332
N+INI LS +C H TI++
Sbjct: 422 NWINILLSYICYHRATIVQ 440
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 204 TYIVIFANNNNHSCSMIYDGFKINNYINIFLSRVCNHY 317
TY+ +F +NN S I N + +FL+ CN Y
Sbjct: 92 TYLPLFKKSNNAYPSKIAFNPISNTTLVLFLTECCNIY 129
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 228 NNNHSCSMIYD-GFKINNYINIFLSRVCNHYYTILR 332
+++H M Y + N Y+ + C HYY IL+
Sbjct: 338 SSDHLNQMTYVFAIEANGYVKDVTRKYCLHYYKILK 373
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -1
Query: 326 YSIIMVTHSRKKNINVIIYFKTIIYHRTRMIIIVSENDDVS 204
YS+++ T++ +KN+ +I Y + + ++ + DD S
Sbjct: 4 YSVLLPTYNERKNLPIITYLIAKTFDQEKLDWEIVIIDDAS 44
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 272 YFKTIIYHRTRMIIIVSENDDVSKGRGG 189
Y++ I+HR ++ D GRGG
Sbjct: 311 YYRNTIFHRNIARFMIQGGDPSGTGRGG 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,517
Number of Sequences: 5004
Number of extensions: 33131
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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