Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E02
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U51994-3|AAM69099.1|   78|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 80  SFSASHSLHTFII*NTSSLFTTSPPR 3
           ++ +S  +H F+I NT+++FT   PR
Sbjct: 86  TYKSSQFIHKFLIHNTTTVFTRGVPR 111


>U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical
           protein B0218.5 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 143 ASGARLRD*TTPLPWHPRVPYL 208
           A+ ++++D T PL W P VPY+
Sbjct: 300 AAASKIKD-TDPLDWDPNVPYM 320


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 49  NVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNY 174
           NV +EWD E+E++ + +   +V    + +  RE C  SR NY
Sbjct: 360 NVKDEWDREREVMLTLIDLFLVAGDENHDIYREYC-TSRRNY 400


>U51994-3|AAM69099.1|   78|Caenorhabditis elegans Hypothetical
           protein R03G5.7 protein.
          Length = 78

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 84  YFFFCIPFITHVHHIKHIISLYYFS 10
           +  FCI     +H   +++S++YFS
Sbjct: 44  FALFCISTYPQIHRWSYLVSIFYFS 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,838,893
Number of Sequences: 27780
Number of extensions: 185275
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)