Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_E02
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    27   0.14 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.1  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 225 NNNNHSCSMIYDGFKINNYINIFLSRVCNHYYTILRV 335
           NNNN+  +   + +  NNY N + +     YY I+ +
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINI 361


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 326 YSIIMVTHSRKKNINV 279
           YS+ MV HS+   IN+
Sbjct: 483 YSLPMVNHSKSSRINI 498


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 117 EVFKFRE*ARAVRGFETELHPCRGTP--ASLTYIVIFANNN--NHSCSMIYDGFKINNYI 284
           E  K+RE ++      TE    R     +SL+   I  NNN  N++ +  Y+ +  NNY 
Sbjct: 288 EYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYN 347

Query: 285 N 287
           N
Sbjct: 348 N 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 190  VPRQGCSSVSKPRTARAYSRNLNT 119
            +P  G  S+    +   Y RN+NT
Sbjct: 1204 IPSAGDISIESKSSPLVYKRNINT 1227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,399
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)