Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E01
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1334 - 35765973-35766068,35766272-35766353,35766448-357664... 102 2e-22
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 30 1.0
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445... 28 3.1
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 28 3.1
02_02_0278 + 8500983-8501253,8501343-8501558,8501704-8501855,850... 28 3.1
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 28 4.1
06_03_0830 + 25159758-25162460 27 5.4
06_01_0096 - 794148-794246,795682-796975,798960-799417 27 7.2
10_03_0002 - 6858257-6861205 27 9.5
05_01_0120 - 828834-831143 27 9.5
>02_05_1334 -
35765973-35766068,35766272-35766353,35766448-35766485,
35766601-35766657,35766795-35766858,35766947-35767043,
35767604-35767656,35767837-35767921,35768649-35769675
Length = 532
Score = 102 bits (244), Expect = 2e-22
Identities = 57/149 (38%), Positives = 76/149 (51%)
Frame = +3
Query: 6 MDETAVKKLVLTFEKKALRNREMRIKFPDQPEKFMDSEIDLHDALQDLSAVATVPDQYPL 185
+D A K+L+L FE++ N E R+K PD P +F DSEI LH L +A PD +P
Sbjct: 35 LDLRAAKRLLLAFERRLRDNLEARMKHPDDPARFADSEIALHAETDRLRLLAGAPDLFPD 94
Query: 186 LVELKCINSLLELLSHDNTDVSTKVVQLLQELTDVDILNESXXXXXXXXXXXXXXXXXXX 365
LV L +SL LL+HDN D++ LL +LTD D +
Sbjct: 95 LVPLGLASSLSSLLTHDNADLAAAAASLLADLTDSDD-PDDLAGLHSLADALVEANALDL 153
Query: 366 XXXXXSRLDEQVPDERDAVHNTLGIVENI 452
SR E PDE +AVH+TL +VEN+
Sbjct: 154 LVHNLSRFSEADPDEAEAVHHTLSVVENL 182
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -2
Query: 334 LINSSAPSSLSFKISTSVSSCKSWTTFVDTSVLSCDNNSNKELIHFNSTSNGYWSGTVAT 155
++ S+ SS+S+K+ TSV S T + ++ ++ K L S+S+ SG VAT
Sbjct: 591 IVTSNWKSSVSYKVHTSVDSSSQRTMSSLSDIIHFNSLRMKSL----SSSSSSLSGNVAT 646
Query: 154 ALKSCNASCRSI 119
+ +C I
Sbjct: 647 VPQDSLPNCSDI 658
>10_08_0377 +
17343244-17343372,17344316-17344393,17344496-17344558,
17344836-17344883,17345203-17345349,17346264-17346395,
17346905-17346945,17347605-17347633,17348969-17349096,
17349919-17349994,17350111-17350231,17350300-17350399,
17350491-17350572,17350664-17350746,17351978-17352088,
17352260-17352311,17352363-17352408,17352652-17352860,
17353128-17353251,17353667-17353741,17353837-17353891,
17354476-17354595,17354670-17354762,17354869-17355014,
17355152-17355329,17356876-17357110,17357824-17357912
Length = 929
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = +3
Query: 99 EKFMDSEIDLHDALQDLSAVATVPDQYPLLVE------LKCINSLLELLSHDNTDVSTKV 260
E+ DS D D +A + D Y L+ ++ +N+LLE+ SH D+S+
Sbjct: 258 EQLKDSSKDEEDVKAIARLLADMGDSYVELIAAGSDDAMQIVNALLEVTSHSEFDISSMT 317
Query: 261 V----QLLQELTD 287
L++ LTD
Sbjct: 318 FNFWHHLMRNLTD 330
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/55 (25%), Positives = 33/55 (60%)
Frame = +3
Query: 3 TMDETAVKKLVLTFEKKALRNREMRIKFPDQPEKFMDSEIDLHDALQDLSAVATV 167
T+D+ VK + + ++ + L + ++++ + ++F+D E DL D L+D + T+
Sbjct: 380 TLDKDLVKMVCMEYDVEVLESGPVKVEEMAKKKEFLDEE-DL-DKLEDRPPIVTI 432
>02_02_0278 +
8500983-8501253,8501343-8501558,8501704-8501855,
8501949-8502222,8503569-8503754,8503939-8503976
Length = 378
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 199 NVLILY*NYYHMIIQMCLQ-KLSNFYRNLP 285
NV I+Y +YY +IQ LQ + FY+ LP
Sbjct: 282 NVRIIYGDYYTPVIQFMLQPEKFGFYKQLP 311
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 280 SSCKSWTTFVDTSVLSCDNNSNKELIHFNSTSNGYWS-GTVATALKSCNASCRSISLSIN 104
S+ ++ +F+D S S NN +K I + SNG W+ G++ L+ +++S +
Sbjct: 1210 SASRALQSFLDFSA-SIMNNESKHCIETENNSNGIWTKGSIHQILEKTYLHNMGVAMSKD 1268
Query: 103 FS 98
S
Sbjct: 1269 IS 1270
>06_03_0830 + 25159758-25162460
Length = 900
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 147 LSAVATVPDQYPLLVELKCINSLLELLSHDNTDVSTK 257
LSA+ +P + + ++++ LLSH NTD++ K
Sbjct: 100 LSALECLPVENAQITSCGVLHTVEHLLSHSNTDINKK 136
>06_01_0096 - 794148-794246,795682-796975,798960-799417
Length = 616
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 150 LSPVMHHVDQFHYP*TFLVDLETLFSFLCSLEPFFQ 43
L+ HH+D+ Y L+ + SF C L FF+
Sbjct: 190 LTQAAHHLDRGQYQSLILIAATSFGSFFCLLTGFFK 225
>10_03_0002 - 6858257-6861205
Length = 982
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 48 KKALRNREMRIKFPDQPEKFMDSEIDLHDALQDLSAVATVPDQYPLLVE 194
K+ L RE+ PD P+ SEI + D P +YPL+++
Sbjct: 733 KRKLTEREINAVQPDTPQYLRWSEIAIKFDRSDHPDRVVHPGRYPLVLD 781
>05_01_0120 - 828834-831143
Length = 769
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 306 FHLKYLRR*VPVKVGQLL*THLYYHVIIILIK 211
FHLK L +PVKV L+ ++Y+ +L+K
Sbjct: 735 FHLKELGNTLPVKVPTLILYNIYFVYSTLLLK 766
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,070,810
Number of Sequences: 37544
Number of extensions: 170980
Number of successful extensions: 437
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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