Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_E01
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80450-6|AAB37831.1| 544|Caenorhabditis elegans Hypothetical pr... 130 5e-31
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL021175-3|CAA15963.2| 467|Caenorhabditis elegans Hypothetical ... 28 2.8
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 28 3.7
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 27 4.9
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z92973-2|CAB07492.2| 964|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine re... 27 8.6
AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical ... 27 8.6
>U80450-6|AAB37831.1| 544|Caenorhabditis elegans Hypothetical
protein M01E11.2 protein.
Length = 544
Score = 130 bits (314), Expect = 5e-31
Identities = 62/149 (41%), Positives = 88/149 (59%)
Frame = +3
Query: 6 MDETAVKKLVLTFEKKALRNREMRIKFPDQPEKFMDSEIDLHDALQDLSAVATVPDQYPL 185
+D+ VKKLV+ +KK NRE R+K PD +KFM+SEI+L A+Q++ ++A+ PD Y
Sbjct: 59 LDDVQVKKLVIQLDKKMRLNREQRVKNPDDAQKFMESEIELDKAIQEMHSLASQPDLYGS 118
Query: 186 LVELKCINSLLELLSHDNTDVSTKVVQLLQELTDVDILNESXXXXXXXXXXXXXXXXXXX 365
VE+ + LL+LL H+NTD+ + LL+ELTD D++NE
Sbjct: 119 FVEVNGVEILLQLLGHENTDIVCATLSLLRELTDDDVMNEGEDGAAELIESLVSGSIITT 178
Query: 366 XXXXXSRLDEQVPDERDAVHNTLGIVENI 452
RLDE V DE D VHN LG+V+N+
Sbjct: 179 LLACVERLDESVKDEADGVHNALGVVDNM 207
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/96 (20%), Positives = 42/96 (43%)
Frame = -2
Query: 409 SSGTCSSKRDXXXXXXXXXXXXXXALINSSAPSSLSFKISTSVSSCKSWTTFVDTSVLSC 230
SSG+ S + + +++S+ SS ++STS S T T+ +
Sbjct: 1452 SSGSTSPSTNSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTVASSTASPAA 1511
Query: 229 DNNSNKELIHFNSTSNGYWSGTVATALKSCNASCRS 122
+ + +STS+G T++ + + +AS ++
Sbjct: 1512 SSTAPSSTGTMSSTSSGTVGSTISESSTTASASSQT 1547
Score = 28.3 bits (60), Expect = 2.8
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Frame = -2
Query: 445 STIPSVL*T-ASLSSGTCSSKRDXXXXXXXXXXXXXXALINSSAPSSLSFKISTSVSSCK 269
ST PS T +S SSGT S + S+ +S S ++STS S
Sbjct: 1762 STAPSSTGTMSSTSSGTVGSTMSQSSTAASTTSHTGSTVTLGSSSTS-SNQMSTSQGSSV 1820
Query: 268 SWTTFVDTSVLSCDNNSNKELIHFNSTSNGYWSGTVATALKSCNASCRS 122
T T+ L + STS+G T++ + + +AS ++
Sbjct: 1821 GSTVASSTAGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTTASASSQT 1869
>AL021175-3|CAA15963.2| 467|Caenorhabditis elegans Hypothetical
protein Y6E2A.4 protein.
Length = 467
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 60 RNREMRIKFP--DQPEKFMDSEIDLHDA 137
R R++ P DQPE+F+D E DL DA
Sbjct: 74 RKLSARLRKPKDDQPEEFLDFENDLRDA 101
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 27.9 bits (59), Expect = 3.7
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 7/117 (5%)
Frame = -2
Query: 445 STIPSVL*TASLSSGTCSSKRDXXXXXXXXXXXXXXALINSSAPSSLSFKISTSVSSCKS 266
ST S TA SS T S + SS SS + S S+C S
Sbjct: 81 STSSSDTTTADSSSTTSSDSSTTSSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTS 140
Query: 265 W-------TTFVDTSVLSCDNNSNKELIHFNSTSNGYWSGTVATALKSCNASCRSIS 116
W ++F T++ + + L +S+S+ S + A+ SC S S S
Sbjct: 141 WAANGFCTSSFYTTAIKTQYCAATCSLC--SSSSDSSSSSSTASTSSSCTDSASSCS 195
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 204 INSLLELLSHDNTDVSTKVVQLLQELTDVDILNE 305
+NSL + S+ N+DVS QLL+EL DV +E
Sbjct: 715 VNSLASIGSYSNSDVS----QLLKELIDVCFCDE 744
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical protein
W10C6.1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 171 DQYP-LLVELKCINSLLELLSHDNTDVSTKVVQLLQELTDV 290
D+YP + +EL C+ + E + D + + ++LL E D+
Sbjct: 1398 DEYPNVQIELSCVRDVTERTTMDLAQLQKRSLKLLSESLDL 1438
>Z92973-2|CAB07492.2| 964|Caenorhabditis elegans Hypothetical
protein Y6G8.2 protein.
Length = 964
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 144 DLSAVATVPDQYPLLVELKCINSLLELLSHDNTDVSTKVVQLLQELTD 287
D A +PD PL C+N L ++L H T +S K+ L+ + D
Sbjct: 711 DFIATRMMPDDTPLNC---CMNDLEQILKHQKTPIS-KLAFTLRSIDD 754
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
F36H2.3 protein.
Length = 1388
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -2
Query: 268 SWTTFVDTSVLSCDNNSNKELIHFNSTSNGYWS----GTVATALKSCNASCRSISLSINF 101
S T+F +V + + ++ ++ +NG WS GT + +C+A R + ++ +
Sbjct: 1074 STTSFTSGTVATVTCTTGGSMLGTSTCTNGLWSPAIMGTCSGTGNTCSALTRPVGETVTY 1133
Query: 100 SG 95
G
Sbjct: 1134 DG 1135
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 247 TSVLSCDNNSNKELIHFNSTSNGYWSGTVATALKS 143
T+ L+C N++ ++S SNG W+ T+ + S
Sbjct: 1214 TATLTCLNSATLTGSSYSSCSNGVWTPTLGSCTSS 1248
>AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 3 protein.
Length = 341
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 146 VL*CIM*INFTIHKLFWLIWKLYSHFSVP*SLFFKSKNQFLHC 18
VL CIM I +I+ L+ + + + HF+ LF + +HC
Sbjct: 27 VLLCIMCIPISIYSLWRIYFSVKLHFNSKIVLFTNNTFVLIHC 69
>AC006673-3|AAF39929.1| 861|Caenorhabditis elegans Hypothetical
protein K09D9.11 protein.
Length = 861
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 126 LHDALQDLSAVATVPDQ-YPLLVELKCINSLLEL-LSHDNTDVSTKVVQ 266
+HD DLSA PD+ Y L E + I+ LL+ +S D + V++
Sbjct: 810 IHDGTMDLSAYKNDPDEMYTLFTEEEFIHFLLKRDISRDTSKFPIPVLK 858
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,442,564
Number of Sequences: 27780
Number of extensions: 175110
Number of successful extensions: 508
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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