Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D24
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 291 2e-79
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 32 0.39
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 32 0.39
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr... 31 0.67
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 29 2.1
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 29 2.7
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.7
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81496-4|CAI79124.1| 77|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 27 8.3
U53180-7|AAA96289.1| 425|Caenorhabditis elegans Hypothetical pr... 27 8.3
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 27 8.3
AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine re... 27 8.3
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 27 8.3
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 291 bits (715), Expect = 2e-79
Identities = 134/207 (64%), Positives = 161/207 (77%)
Frame = +3
Query: 6 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 185
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 186 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 365
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 366 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCM 545
LCKV+ V T K VP L T DGRT+RYPDP +KVND++ +IST KI D +KF+ GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 546 ITGGRNLGRVGTIVSRERHPGSFDIVH 626
+TGGRN+GRVG I RER PG+ DI+H
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIH 208
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 31.9 bits (69), Expect = 0.39
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 332 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 505
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 506 HGLHQVRLRQPLHDHRRQE 562
H +HQV Q H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 31.9 bits (69), Expect = 0.39
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +2
Query: 332 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 505
PP H ++ R ++P V G + P P H + G R ++HQQ
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482
Query: 506 HGLHQVRLRQPLHDHRRQE 562
H +HQV Q H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500
>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -1
Query: 355 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 197
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
protein F11A10.4 protein.
Length = 1646
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -1
Query: 355 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 197
A+S +R +V+ F I+ + +FS + T +NP+G S R P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 318 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 449
G+ + R+T E Y+ CK+++ A K VP Y+V H R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -3
Query: 224 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 132
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = -3
Query: 224 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 132
+P H ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597
>AL132902-6|CAC14421.1| 316|Caenorhabditis elegans Hypothetical
protein Y71A12B.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 313 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 203
T+ N F FS T S+NP GY+ V TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +2
Query: 371 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLRQPLHDH 550
+G R PQ P + A P+ Q ++ + +Q H HQ RL+Q
Sbjct: 191 RGCPARSAPQRVPAPPAQQYAPRAPEYPSAQQQQQQREQQQREQQHREHQARLQQHQQQQ 250
Query: 551 RRQE 562
++Q+
Sbjct: 251 QQQQ 254
>Z81496-4|CAI79124.1| 77|Caenorhabditis elegans Hypothetical
protein F09C6.13 protein.
Length = 77
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 519 KFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVH 626
K DSGN + T R++ R+ V E H D+ H
Sbjct: 12 KVDSGNTTINTTNRSINRIDNSVDYESHGLDTDLEH 47
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 331 STVSHLK-KPSTSCARCGASRP 393
+TV HL +P TSCA C ++RP
Sbjct: 19 TTVLHLHIRPPTSCATCTSNRP 40
>U53180-7|AAA96289.1| 425|Caenorhabditis elegans Hypothetical
protein D1014.2 protein.
Length = 425
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 438 LRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 548
L +PD LIK+ Q++ STN F+ +D L ++
Sbjct: 34 LLFPDFLIKIRLLFQMNASTNATTTFVPWDHKTLQIV 70
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 385 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 242
T R LYL I +I+ L S++K NNSF+F I+ Y
Sbjct: 15 TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64
>AF022980-5|AAG24192.1| 328|Caenorhabditis elegans Serpentine
receptor, class j protein45 protein.
Length = 328
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -1
Query: 325 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 146
N YI+ + F +D+T N G + SV ++ +T TI +++ +++ S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 378 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 512
R ++TG ++P +HD + + D L K + + +S+++ MD
Sbjct: 18 RCLSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,045
Number of Sequences: 27780
Number of extensions: 297705
Number of successful extensions: 1021
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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