Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D23
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 155 5e-39
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 152 3e-38
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 32 0.063
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 28 1.0
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 1.0
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.4
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 1.4
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 4.2
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 4.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 4.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 5.5
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.5
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 25 5.5
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 5.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 5.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 7.3
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 7.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.3
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 7.3
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 9.6
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 155 bits (375), Expect = 5e-39
Identities = 68/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +2
Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 457
+I +RS++KPF+K VNYNHLMPTRY+++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 458 RYKSGKNKWFFQKLRF 505
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 152 bits (369), Expect = 3e-38
Identities = 66/136 (48%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +2
Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 457
+I KRS++KPF+K +NYNHLMPTRY+++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 458 RYKSGKNKWFFQKLRF 505
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.9 bits (69), Expect = 0.063
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 41 ENILKNPRNTVIHKIKTDPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 196
EN+ K R V P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 33 ENVPKKARKAV------RPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 97 IQDG*DYETWKSGAGPQRPVR 159
++ G + E WKSGAG Q P++
Sbjct: 432 VRGGMEVEVWKSGAGAQLPMK 452
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -1
Query: 487 EPFVLSALVSLFETDPCVETQL---LALSWVF 401
EPF ++ ++S ++ PCV T L + L+W F
Sbjct: 120 EPFQIARIISFEKSRPCVSTNLYDSVRLNWYF 151
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 110 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 193
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 157 VPAAEDQHHFSRFHNLTHLGWI 92
+P +HFSRF + T GWI
Sbjct: 7 IPFTRALYHFSRFRSFTTSGWI 28
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 231 TKACPYGLSDV-PSS*FFTTMALRPAY--RPLRTSTTFPGFIIL 109
T AC YGL +V S+ FF +++R Y R ++ FP I++
Sbjct: 73 TMACNYGLKNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVM 116
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 305 IKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTR 442
+ PF K Y H + T S S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 136 HHFSRFHNLTHLGWICFNFVYYCITRIF 53
H F F ++ L W+C +FV+Y +F
Sbjct: 201 HPFYLFQAVSVLIWLCDSFVFYSCCIVF 228
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 286 FIFSHPFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFT 164
FI F ++ D ESM F+R A +++ Y G T
Sbjct: 1092 FICQQVFQSVILAIHDPYFESMQSDFIRLACIILSYSQGIT 1132
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 368 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 502
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 275 GKNKIHKRSKIKPFVKGVNYNHLMPTR-YSVDFSFEKFSAKDLKDP 409
G + I R K P K VNYNH + S +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 108 VRL*NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSS 233
+RL L ++CWS ++ S R +LT ++++L++
Sbjct: 94 LRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELLAA 135
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 239 IDRYPRKVHKRMGKN--KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPA 412
+DR R + + K+ +I+ + + P ++G L+ + SFE S KD+K P
Sbjct: 450 VDRNSRGIEGFLKKSNDEIYMSTSVSPSIEG--RAKLLNENMRENNSFELSSEKDIKSPK 507
Query: 413 KRKK 424
+ K+
Sbjct: 508 RLKR 511
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 210 LSDVPSS*FFTTMALRPAYRPLRTSTTFPG 121
L ++P + FF T+ AY P S T G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 343 NANPLFCRLQL*KIQCKGPKRPS*AQEAAFQH 438
N +P+ QL K++ P++PS A +++F H
Sbjct: 271 NISPVSPFAQLVKLEPTSPQKPSFALDSSFSH 302
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 362 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 478
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 362 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 460
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 275 GKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKF 385
G+ KIH + +++ N+ H+ TR+ F KF
Sbjct: 85 GEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKF 121
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 106 HLG-WICFNFVYYCITRIF 53
HLG W CF F+ CI+ ++
Sbjct: 308 HLGLWFCFFFLTACISALY 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,655
Number of Sequences: 5004
Number of extensions: 50995
Number of successful extensions: 136
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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