Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D23
         (547 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L19527-1|AAA19815.1|  136|Homo sapiens ribosomal protein L27 pro...   205   9e-53
L05094-1|AAC15857.1|  136|Homo sapiens ribosomal protein L27 pro...   205   9e-53
BC098560-1|AAH98560.1|  136|Homo sapiens ribosomal protein L27 p...   205   9e-53
BC010026-1|AAH10026.1|  136|Homo sapiens ribosomal protein L27 p...   205   9e-53
BC007273-1|AAH07273.1|  136|Homo sapiens ribosomal protein L27 p...   205   9e-53
BC002588-1|AAH02588.1|  136|Homo sapiens ribosomal protein L27 p...   205   9e-53
BC001700-1|AAH01700.1|  136|Homo sapiens ribosomal protein L27 p...   205   9e-53
AB061851-1|BAB79492.1|  136|Homo sapiens ribosomal protein L27 p...   205   9e-53
BC021886-1|AAH21886.1|  140|Homo sapiens RPL27 protein protein.       184   2e-46
U25752-1|AAA93226.1|   40|Homo sapiens ribosomal protein L27 pro...    60   4e-09

>L19527-1|AAA19815.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>L05094-1|AAC15857.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>BC098560-1|AAH98560.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>BC010026-1|AAH10026.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>BC007273-1|AAH07273.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>BC002588-1|AAH02588.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>BC001700-1|AAH01700.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>AB061851-1|BAB79492.1|  136|Homo sapiens ribosomal protein L27
           protein.
          Length = 136

 Score =  205 bits (500), Expect = 9e-53
 Identities = 97/136 (71%), Positives = 111/136 (81%), Gaps = 2/136 (1%)
 Frame = +2

Query: 104 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 283
           MGK MKPGKVVLVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK 
Sbjct: 1   MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60

Query: 284 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEE 457
           KI KRSKIK FVK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEE
Sbjct: 61  KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120

Query: 458 RYKSGKNKWFFQKLRF 505
           RYK+GKNKWFFQKLRF
Sbjct: 121 RYKTGKNKWFFQKLRF 136


>BC021886-1|AAH21886.1|  140|Homo sapiens RPL27 protein protein.
          Length = 140

 Score =  184 bits (448), Expect = 2e-46
 Identities = 87/125 (69%), Positives = 101/125 (80%), Gaps = 2/125 (1%)
 Frame = +2

Query: 137 LVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPF 316
           LVL+GRY+GRKA++VKN D+GTSD+PY HA VAGIDRYPRKV   MGK KI KRSKIK F
Sbjct: 16  LVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSF 75

Query: 317 VKGVNYNHLMPTRYSVDFSFEKFSA-KDL-KDPAKRKKLRFNTRVRFEERYKSGKNKWFF 490
           VK  NYNHLMPTRYSVD   +K    KD+ +DPA ++K R   +V+FEERYK+GKNKWFF
Sbjct: 76  VKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFF 135

Query: 491 QKLRF 505
           QKLRF
Sbjct: 136 QKLRF 140


>U25752-1|AAA93226.1|   40|Homo sapiens ribosomal protein L27
           protein.
          Length = 40

 Score = 60.5 bits (140), Expect = 4e-09
 Identities = 26/39 (66%), Positives = 33/39 (84%), Gaps = 1/39 (2%)
 Frame = +2

Query: 392 KDL-KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 505
           KD+ +DPA ++K R   +V+FEERYK+GKNKWFFQKLRF
Sbjct: 2   KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,931,130
Number of Sequences: 237096
Number of extensions: 1710415
Number of successful extensions: 3302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)