Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D22
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    28   0.82 
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    28   0.82 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   1.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   1.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.4  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 82  IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 189
           I H+ H KS L+    ++   +N HN+R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 408 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAW 497
           EY + + APL QS +   +P+IG +  +A+
Sbjct: 27  EYGEVETAPLSQSSWIYRRPRIGRFKSLAY 56


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 330 ENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKS 461
           +N YW  TTDS ++L V+       NE ++     L++ DF+K+
Sbjct: 356 KNTYWLYTTDSLHELVVN-------NETREASLVFLEKGDFEKA 392


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = -3

Query: 457 LSKSLCFKGAXXXXXXXLNQLSIALSTFSLYVLSVVEYQYKFSPVWNLPDPKVLSGLWKX 278
           L  S+ F+G+       LNQL+I L++ S Y  S + ++   S +  L    V   + + 
Sbjct: 15  LRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRESVRLAMQRI 74

Query: 277 XXXXXXXXXXXXXXHPTPYISFQLQ 203
                         + +  +S QLQ
Sbjct: 75  PSENAIITSTSTESNKSKKLSDQLQ 99


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
 Frame = +3

Query: 213 NEIYGVGXXXXXXXXXXXXQNKN-FHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNA 389
           +++Y  G             N N F  P +  G  + +  +    Y     TY   VD++
Sbjct: 119 SQVYNDGSTLNSNNTTQQLNNNNGFQPPPQNPGISKSRIAQ----YHQPSQTYDDTVDSS 174

Query: 390 MESWFNEYKDYKYAPLKQSDFDKSK 464
              W+     +  AP + S  + S+
Sbjct: 175 FYDWYKAGAQHNLAPPQSSHTEASQ 199


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 148 GHNYRRQLLAKGQVSGHPAATE 213
           G N+RRQLL  G+  G  AA+E
Sbjct: 854 GDNWRRQLLENGKSFGLEAASE 875


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,528
Number of Sequences: 5004
Number of extensions: 48139
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)