Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D20
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    28   0.55 
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   0.96 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   2.2  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    26   2.2  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.9  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    25   3.9  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    25   3.9  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    25   6.7  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    25   6.7  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    24   8.9  

>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 413 HRTHLCC*RWNWQRFHDGRQFRSANDDNVYC 321
           H+  +C   WN+    DG QF S  +DN+ C
Sbjct: 288 HQEQVCGLEWNY----DGTQFASGGNDNLVC 314


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 413 HRTHLCC*RWNWQRFHDGRQFRSANDDNVYC 321
           H   +C   WN    HDG QF S  +DN  C
Sbjct: 321 HDEQVCGLTWN----HDGSQFASGGNDNRVC 347


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 TLISLITINVVIVCTPELPTIMESLPIPSLTT 398
           T+I+ ITI  +++ TP       ++P+  +TT
Sbjct: 4   TIIAAITITTIVIITPMEEITTMTIPMEEITT 35


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 362 HHGIVANSIANNKDVFCEKPI 424
           H+ +V  ++ N+K V CEKP+
Sbjct: 94  HYEVVKLALLNDKAVLCEKPL 114


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 161 VISDRFKT*HQGRRVPEFKKYEILXKC 241
           ++  R  T H G    +FKKY+IL  C
Sbjct: 252 LVLKRLDTDHAGLGSKKFKKYQILEAC 278


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 362 HHGIVANSIANNKDVFCEKPIAET 433
           H+ +V+ ++   K V CEKP   T
Sbjct: 81  HYEVVSQALNAGKHVLCEKPFTPT 104


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 369 ESLPIPSLTTKMCSVKNPSLRL 434
           ES+P P L  K+ S  NP L L
Sbjct: 53  ESMPAPKLFPKLTSKPNPQLNL 74


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 116 WMYRLSQGKRPLNFTGNRSEISVHVSN 36
           W+ +L+    PLN TGN S ++   S+
Sbjct: 328 WISQLNVTYAPLNITGNNSGVTYQPSS 354


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  LGSIASEIKWPFPLTQAVHPV 119
           LG IA+ + W +PL  A+ P+
Sbjct: 128 LGVIAALVSWNYPLHNALGPI 148


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 338 RLHSGTAYHHGIVANSIANNKDVFCEKPIAETV 436
           +LH+  A    + ANS++++K +   K   E++
Sbjct: 194 QLHNEEAAWRAVAANSVSSDKSILSFKKAVESI 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,509
Number of Sequences: 5004
Number of extensions: 27885
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)