Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D20
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   2.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   5.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.9  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 311 KFNYNKRCHRLHSGTAY 361
           K+NYN  C +L+    Y
Sbjct: 97  KYNYNNNCKKLYYNINY 113


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 293 KFLYLNKFNYN 325
           K+ Y NK+NYN
Sbjct: 97  KYNYNNKYNYN 107


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 54  NLGSIASEIKWPFPLTQAVHPV 119
           +L  +    K+PF L +A+H V
Sbjct: 437 SLSDVTPRKKYPFELEKALHNV 458


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 341 LHSGTAYHHG 370
           LH G AYH G
Sbjct: 155 LHHGMAYHRG 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,628
Number of Sequences: 438
Number of extensions: 2208
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)