Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D19
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    25   3.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   3.7  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    24   6.4  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    23   8.5  
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    23   8.5  

>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 127 FCTVEPQHIGDIGRSAFRHYFSDGKNLKLFLN 32
           F TVE   +  IG++A++ YF  GK L + L+
Sbjct: 112 FFTVEDDDLYSIGQAAYKPYFR-GKKLIMQLD 142


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 59  WQKFEIIFELVHNQLDLV 6
           W++ EIIFE+++ + D V
Sbjct: 446 WKRQEIIFEVIYTERDFV 463


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 142 SDLICFCTVEPQHIGDIGRSAFRHYFSDGK--NLK 44
           S+ I +   E + I ++G S FR+YF  GK  NLK
Sbjct: 6   SEFINWKLYEFKKINELGTSTFRYYFK-GKIVNLK 39


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 270 F*VFSILFFSLGCFLFPNTCYLSLISTFH 184
           F V S ++F L       +CY+ LI  FH
Sbjct: 125 FMVESAIYFLLKKHFRQESCYVDLIELFH 153


>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 117 TVQKQIKSEHPGLKVTEIAKK 179
           T+  QI ++   LK++E+AKK
Sbjct: 21  TIMVQIAAKERALKISELAKK 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,568
Number of Sequences: 5004
Number of extensions: 23600
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)