Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D19
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 40 3e-04
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 37 0.003
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 36 0.007
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 33 0.049
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 29 1.0
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 27 3.2
05_03_0021 - 7435810-7435842,7436573-7436869 27 4.2
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084... 26 5.6
04_04_0802 - 28155281-28155725,28155750-28156081,28156164-281562... 26 5.6
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 26 5.6
07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951... 25 9.7
07_01_0169 - 1182240-1182253,1182887-1182964,1183518-1184640 25 9.7
01_06_1673 + 39059483-39059611,39059851-39060032,39060247-390604... 25 9.7
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +3
Query: 75 RKAERPMSPICCG-STVQKQIKSEHPGLK-VTEIAKKGGEMWKSMKD 209
+K +RP + S +K+ K+EHP K V+ +AK+GGE WKSM D
Sbjct: 90 KKGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSD 136
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 84 ERPMSPICCGSTVQK-QIKSEHPGLKVTEIAKKGGEMWKSM 203
+R M+P S ++ +K+ +P L TEIAKK GEMW+ M
Sbjct: 600 KRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 35.9 bits (79), Expect = 0.007
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 33 FKNNFKFLPSEK**RKAERPMSPICCG-STVQKQIKSEHPGLK-VTEIAKKGGEMWKSMK 206
F+ + + +EK K +RP S +K K +HP +K V+ I K GG+ WKSM
Sbjct: 19 FRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMT 78
Query: 207 D 209
D
Sbjct: 79 D 79
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 33.1 bits (72), Expect = 0.049
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 84 ERPMSPICCGSTVQK-QIKSEHPGLKVTEIAKKGGEMWKSM 203
+R ++P S ++ +K+ +P L TEIAKK GE W+ M
Sbjct: 559 KRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 121 TVEPQHIGDIGRSAFRHYFSDGKNLKLFL-NW 29
TVEP+ + D+ SA R DGKN K L +W
Sbjct: 762 TVEPKDLRDLYYSASRQEVGDGKNTKFRLADW 793
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 160 TFSPGCSDLICFCTVEPQHIGDIGRS 83
++ P D+I V+P+HI DI R+
Sbjct: 78 SYVPSVGDIIILSDVKPEHISDITRN 103
>05_03_0021 - 7435810-7435842,7436573-7436869
Length = 109
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 235 LLSLPKYLLSFIDFHISPPF 176
++ P++ LSF++FH P F
Sbjct: 27 IILYPRFTLSFLEFHFGPAF 46
>09_02_0621 -
11307417-11307813,11308078-11308246,11308372-11308440,
11308635-11308761,11308985-11309253,11309356-11309522,
11309730-11309801,11310205-11310329
Length = 464
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 22 LCTSSKIISNFCHQKNNDGKPNGLCHLYAV 111
L S+ +I FCH+K GL H Y+V
Sbjct: 100 LLVSAILIFCFCHKKRKQQMTLGLVHQYSV 129
>04_04_0802 -
28155281-28155725,28155750-28156081,28156164-28156266,
28156347-28156528,28156617-28156800,28156872-28156960,
28157634-28157710,28157837-28157927,28158230-28158430
Length = 567
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 84 ERPMSPICCGSTVQKQIKSEHPGLKVTEIAKK---GGEM-WKSMK--DNKYLGRESS 236
E PM IC + + HP ++ E +K GE W+ + +N LGR+SS
Sbjct: 495 EHPMDCICAKTKGRSGHSKPHPSNRIGEAMEKRANDGEFDWRDLDYGENTPLGRDSS 551
>01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 55 CHQKNNDGKPNGLCHLYAVAQQCRNRSS 138
CH ++ P +C + Q CRN +S
Sbjct: 1000 CHFSHSSRAPRPICKFFLTLQGCRNGNS 1027
>07_03_0591 +
19792694-19792738,19794190-19794509,19795104-19795161,
19798000-19798056,19798373-19798440,19798454-19798543,
19798619-19798820,19798902-19798988,19799642-19799719,
19799815-19800040,19800260-19800483,19801988-19802014,
19802470-19802518,19802594-19802688,19802778-19802864,
19802973-19803100,19803198-19803294,19803563-19803788,
19803888-19804294
Length = 856
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = -1
Query: 250 VL*PWLLSLPKYLLSFIDFHISPPFLAISVTFSPGCSDLICFCTVEPQHIGDIGRSAF 77
V+ P L L + SFI FH+ FL ++ S + F V Q G + F
Sbjct: 797 VVLPMLFGLLMVITSFIIFHVKNEFLLVTALCSMSFYNQARFDAVSNQTCGFVSGVKF 854
>07_01_0169 - 1182240-1182253,1182887-1182964,1183518-1184640
Length = 404
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -1
Query: 241 PW--LLSLPKYLLSFIDFHISPPFLAISVTFSPGCSDLICFCTVEPQHIGDI 92
PW LL+ +L + DFH +PP L + G D T P DI
Sbjct: 45 PWRRLLTDQAFLRRYRDFHGAPPLLGFLHNVAGGGEDRYVPFTASPVSPPDI 96
>01_06_1673 +
39059483-39059611,39059851-39060032,39060247-39060445,
39060532-39060693,39060920-39061222,39061343-39061603
Length = 411
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 203 H*FPHFTSFFGYF 165
H FPH T FFG+F
Sbjct: 99 HIFPHRTGFFGWF 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,865,901
Number of Sequences: 37544
Number of extensions: 141509
Number of successful extensions: 375
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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