Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D19
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    20   6.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   6.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   6.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   8.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   8.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   8.3  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 99  PICCGSTVQKQIKSEHPGLKV 161
           P  CG T    +K   PG K+
Sbjct: 19  PSACGKTNLAMMKPTLPGYKI 39


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 159 VTEIAKKGGEMWKSMKDNKYLG 224
           + +I    GE+  S+ D  Y G
Sbjct: 500 IVDIVMANGEVATSLSDGSYFG 521


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 159 VTEIAKKGGEMWKSMKDNKYLG 224
           + +I    GE+  S+ D  Y G
Sbjct: 468 IVDIVMANGEVATSLSDGSYFG 489


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 264 VFSILFFSLGCFLFPNTCYLSLIS 193
           VFS+LF+   C    N C  +L S
Sbjct: 43  VFSVLFWLGYCNSAINPCIYALFS 66


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 264 VFSILFFSLGCFLFPNTCYLSLIS 193
           VFS+LF+   C    N C  +L S
Sbjct: 491 VFSVLFWLGYCNSAINPCIYALFS 514


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 89  AYVTYMLWLNSAETDQV*TSWA 154
           A VT++ W+NS     +   W+
Sbjct: 373 AAVTWLGWINSGMNPVIYACWS 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,703
Number of Sequences: 438
Number of extensions: 1755
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)