Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D15
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 180 9e-46
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 163 9e-41
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 74 9e-14
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.4
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 1.9
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 29 1.9
06_01_0793 - 5918912-5919793,5919830-5920285 29 3.3
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.3
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.3
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 3.3
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 28 4.4
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 5.8
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 180 bits (437), Expect = 9e-46
Identities = 89/177 (50%), Positives = 131/177 (74%), Gaps = 2/177 (1%)
Frame = +2
Query: 17 KILKAGAIEPDTFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 190
KI K +EP FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 191 MPKLKAFQKIQIRLVRELEKKFSGKHVVYVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 370
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 371 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTG 541
+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +VY++L G
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCG 179
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 163 bits (396), Expect = 9e-41
Identities = 83/159 (52%), Positives = 116/159 (72%), Gaps = 2/159 (1%)
Frame = +2
Query: 71 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 244
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 245 EKKFSGKHVVYVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 424
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 425 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTG 541
+R LDG +++K+ LD ++ E+K+DTF SVY++L G
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCG 192
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 73.7 bits (173), Expect = 9e-14
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = +2
Query: 125 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVYVGDRKILPK 304
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VV+ R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 305 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 418
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 395 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 502
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 344 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 460
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = -3
Query: 531 FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 352
FL +D +CS + F+ C L E F L+ TI+ + MA+ T +
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516
Query: 351 ERGLFCLLATRVLWLGLG 298
GL+ +LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 225 SGLSVS*KRSSAVSMLCTLVTVRSCP 302
SG+SV+ KR S CTL +RSCP
Sbjct: 166 SGMSVA-KRCSLAMERCTLAAMRSCP 190
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 77 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 211
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 77 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 211
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 339 FCLLATRVLWLGLGRILRSPTYTTCLPLNFFSNSRTSLI 223
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 17 KILKAGAIEPDTFET--SISQALVELETNSDLKAQLRELYITKAKEIELHN 163
K LK +E D E ISQAL L + S + + +E KEIEL+N
Sbjct: 565 KELKKAKVEHDRKEQLCDISQALAVLASASSVAKERQEFLNLVNKEIELYN 615
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 77 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 211
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,173
Number of Sequences: 37544
Number of extensions: 337139
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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