Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D15
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.097
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.52 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.52 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 0.097
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 47  DTFETSISQALVELETNSDLKAQLRE 124
           +T  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 359 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 529
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 359 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 529
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 38  IEPDTFETSISQALVELETNSDLKAQLRELYITKAKE 148
           + P+TF   ++   V++  N     +L  L +TK  E
Sbjct: 632 VRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAE 668


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 291 LRSPTYTTCLPLNFFSNSRTSLIWIFWNAFS 199
           L  P+Y +    + F+   T  +W+FW +F+
Sbjct: 202 LEGPSYNS----DIFAMIGTIFLWLFWPSFN 228


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 359 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 529
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 555 KSLRAPVNFLYTDWKVSTLC 496
           + LR P N+L     VS LC
Sbjct: 70  RKLRRPCNYLLVSLAVSDLC 89


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 126 CTLPRPRKLNFITKNQLS 179
           C LPRP+  N     +LS
Sbjct: 628 CLLPRPKSENNFASQELS 645


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 126 CTLPRPRKLNFITKNQLS 179
           C LPRP+  N     +LS
Sbjct: 596 CLLPRPKSENNFASQELS 613


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,919
Number of Sequences: 438
Number of extensions: 3647
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)