Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D14
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   1.1  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   2.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   3.3  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   4.4  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.8  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   5.8  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    25   5.8  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    24   7.7  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 161 LILTYLVSVPFYFYCMFPYDLE 96
           +IL ++V   F FYC+FP  ++
Sbjct: 576 MILNFIVRSSFIFYCIFPNHIQ 597


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -3

Query: 297 KRCLELLCEEAGSRIGPAFHRVPNTFQFNDTIKTIAKITAMFFLGINIDVSSLGTFLLLL 118
           K CL++   E        F+ +PN FQF  +++T  + +   F  + I     G  + +L
Sbjct: 532 KSCLQMPLIERRRMFFEHFNLIPNRFQFVSSLETNEEQSIQEFFSLAITNKCEGLMVKVL 591

Query: 117 H 115
           +
Sbjct: 592 N 592


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 80  IENKILRDHMETCSRSRKVPRLDTSILIPKKNI 178
           IENK+ ++ + +        R+DTS+L   KN+
Sbjct: 96  IENKLKKEEVASLIAKLAEERIDTSLLSSSKNL 128


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 257 LEPASSHKSSRHLLWAEENTIDISAENDLTSNGT 358
           L  + S   SR+   ++ N  D+SAEND TSN T
Sbjct: 321 LSRSKSSSLSRNQTRSQLN--DLSAENDSTSNST 352


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 158 ILTYLVSVPFYFYCMFPYDLEVFYFLS 78
           + T ++SVPF+F  M P+   +  FLS
Sbjct: 18  LCTLVISVPFFFLQMTPF-YSILCFLS 43


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 116 CSRSRKVPRLDTSILIPKKNIAVIFAMVF 202
           C   R VPRL   +++P + + V  A  F
Sbjct: 197 CLSHRTVPRLRCVVIVPTRELTVQVAKTF 225


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 10  EKGICYGIRETTIRSSSRDNQATDRK*NTS 99
           + G+ YG+      SS+ DN+  D K N S
Sbjct: 88  DSGLNYGLNIRVASSSAADNEIVDWKANNS 117


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 149 YLVSVPFYFYCMFPYDLEVFYFLSVAWL 66
           ++ +   YF C   Y L  F+FLS  WL
Sbjct: 73  HITNPDVYFLCQCTYYLACFHFLS-EWL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,059
Number of Sequences: 5004
Number of extensions: 34441
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)