Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D14
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 31 0.26
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 29 1.0
10_08_0843 - 20960249-20960446,20960583-20960987,20961092-209612... 29 1.8
08_01_0398 - 3515439-3515573,3515965-3516516 28 2.4
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 28 2.4
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 28 3.2
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 27 4.2
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174... 27 5.6
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 27 5.6
02_01_0773 - 5760034-5760386,5760889-5760925,5761069-5761225,576... 27 5.6
06_03_1157 - 28074675-28074710,28075318-28075514,28075676-280758... 27 7.3
06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,927... 27 7.3
05_05_0082 + 22252993-22255617 27 7.3
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 26 9.7
>12_02_1113 -
26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 14 KEYVTALEKQLLEAHQEITRLRIENKILRDHMETCSRSRK 133
+E + LE QLL ++I R ++NKI +DH+ +S+K
Sbjct: 731 QEKIKELEAQLL-VERKIARQHVDNKIAQDHLHQQQQSKK 769
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 5 EEKKEYVTALEKQLLEAHQEITRLRIENKILRDHMETCSRSRKVPRLDTSILIPKKNIAV 184
+EK++ V L++ L +E+ R E L+ H+E S+++ DT LIP ++
Sbjct: 287 KEKEKTVQDLKQSLDVQRKELNDCRAEITSLKMHIEGTRSSKRLSSGDTDGLIPANSMEE 346
Query: 185 IFAM 196
I +
Sbjct: 347 IVVL 350
>10_08_0843 -
20960249-20960446,20960583-20960987,20961092-20961232,
20961324-20961471,20961742-20961863,20962372-20962412,
20962671-20962839
Length = 407
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 32 LEKQLLEAHQEITRLRIENKILRDHMETCSRSRKVPRLDTSIL 160
LE L++A+ E+TRL+ E I R+H T R+ D IL
Sbjct: 225 LEGALVKANLELTRLKQEMDIPRNHQSTILGDRQEVITDKFIL 267
>08_01_0398 - 3515439-3515573,3515965-3516516
Length = 228
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +2
Query: 5 EEKKEYVTALEKQLLEAHQEITRLRIE---NKILRDHMETCSRSRKV-----PRLDTSIL 160
E E +++Q+L+A +I L+ + +KI R H E C RK+ PR +T L
Sbjct: 90 ESFNELQDEIQRQILQAQTDIEDLKKQLEQSKIERQHKEECEAIRKMISLQPPRSETEKL 149
Query: 161 I 163
I
Sbjct: 150 I 150
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 5 EEKKEYVTALEKQLLEAHQEITRLRIENKILRDHMETCSRSRKVPRLDTSILIPKK 172
EE+ E AL +L +Q++ L E + LR H+E S+S D L+ KK
Sbjct: 441 EERLESEKALTLELAAKYQQMDALEAERRELRGHLE-ASQSEAKNLGDKITLLEKK 495
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -3
Query: 357 VPFDVRSFSAEISIVFSS-AHKRCLEL 280
VPFD+RS ++ +FSS + ++C+EL
Sbjct: 481 VPFDLRSLMDDVISLFSSKSREKCIEL 507
>03_03_0206 + 15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +2
Query: 44 LLEAHQEITRLRIE--NKILRDHMETCSRSRKVPRLDTSILIPKKNIAVIFAMVFMVSLN 217
L+ H ++ R I+ + LR + R+ + SI K + A AM + +
Sbjct: 814 LIPLHLDVFRGDIDLLRQFLRSYQLPFLRAESNKDIYKSIQNSKFSRASYRAMCYCILHE 873
Query: 218 WNVFGTRWNAGPILEPASSHKSSRHLLWAEEN 313
NV G ++ L A+S + HL+W E N
Sbjct: 874 DNVLGAIFSLWKDLGTATSWEDVEHLVWGELN 905
>04_04_0296 +
24216284-24216428,24216631-24216745,24217321-24217411,
24217495-24217640,24217745-24217964,24218037-24218145,
24218273-24218441,24218546-24218720
Length = 389
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 131 FYFYCMFPYDLEVFYFLSVAWLSLDEL 51
F Y +FPYD +FY + + +SLD +
Sbjct: 208 FTTYELFPYDTFIFYTVLTSVISLDRV 234
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +2
Query: 68 TRLRIENKILRDHMETCSRSRKVPRLDTSILIPKKNIAVIFAMVFMVSLNWNVFGTRWNA 247
TR + +++ D + + +K+P+ + ++ V M S N + +
Sbjct: 78 TRKQTVKRLMEDELGKVKQVKKIPKEEVQRILADLGHDVCLEKSSMQSTKQNRAKSHSTS 137
Query: 248 GPILEPAS--SHKSSRHLLWAEENTIDISAENDLTSNGTYGTDCRNVS 385
+ P+ S+ + AEE+ +++S + + Y DC+N S
Sbjct: 138 TAMASPSGLLDPSGSKSMKQAEEDDLELSLADFVGELYGYHDDCKNKS 185
>02_01_0773 -
5760034-5760386,5760889-5760925,5761069-5761225,
5762584-5762773,5762873-5763154,5763582-5763645
Length = 360
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 23 VTALEKQLLEAHQEITRLRIENKILRDHMETCSRSRKVPRLDTSILIPKKNI 178
V LEK+ E + + L+ EN++LR ++ + SR+ P L + IPK +
Sbjct: 205 VKDLEKKNSELEERFSTLQNENQMLRQILKNTTVSRRGPVL---LKIPKSGL 253
>06_03_1157 -
28074675-28074710,28075318-28075514,28075676-28075875,
28076190-28076287,28076798-28076854,28076952-28077010,
28077705-28077738,28077840-28077890
Length = 243
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 2 HEEKKEYVTALEKQLLEAHQEITRLRIENKILRDHMETCSRSR 130
HEEK L ++ EA + +R+ L D E C RS+
Sbjct: 60 HEEKSSLEVILNGKINEASKLSSRIADLESQLNDEKEACERSQ 102
>06_01_1126 - 9277885-9277935,9278129-9278209,9278297-9278350,
9278433-9278564,9278641-9278715,9279056-9279133,
9279215-9279327,9279421-9279535,9280565-9280754,
9281355-9281464,9281559-9281654,9281756-9281818,
9281911-9281988,9282452-9282564,9282664-9282721,
9282797-9282920,9282999-9283060,9283131-9283195,
9283264-9283324,9284242-9284307,9284472-9284531,
9284830-9284960,9285517-9285592,9285701-9285769,
9286065-9286112,9286552-9286671,9286918-9287034,
9287290-9287405,9288348-9288519,9289057-9289100,
9290359-9290712,9291680-9291806
Length = 1072
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 14 KEYVTALEKQLLEAHQEITRLRIENKILRDH--METCSRSRKVPRLDTSILIPKKNIAVI 187
K TAL + H E++R+ ++ I++ + T S++R P T I +P K +++
Sbjct: 888 KVTTTALALLISTRHPELSRIEVQGHIIKTSAGITTRSKARVAPDHWTKIPLPAKIFSLL 947
>05_05_0082 + 22252993-22255617
Length = 874
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -3
Query: 276 CEEAGSRIGPAFHRVPNTFQFNDTIKTIAKITAMFFLGINIDVSSL 139
C AG G FH + ++++D I + + +M+ NID + +
Sbjct: 513 CPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQI 558
>02_04_0498 +
23480930-23481186,23483615-23483705,23483790-23483935,
23484029-23484248,23484314-23484422,23484518-23484686,
23484801-23484975
Length = 388
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 131 FYFYCMFPYDLEVFYFLSVAWLSLDEL 51
F Y +FPYD VFY + + ++LD +
Sbjct: 207 FTTYELFPYDTFVFYTVITSIITLDRV 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,318,649
Number of Sequences: 37544
Number of extensions: 198573
Number of successful extensions: 577
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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