Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D14
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    29   1.2  
AC006729-5|AAK84599.2|  568|Caenorhabditis elegans Hypothetical ...    28   2.2  
U80837-8|AAB37908.1|  412|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z92775-4|CAB07163.4|  501|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    27   3.8  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AL132895-5|CAC35863.3|  501|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    27   6.7  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    26   8.8  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    26   8.8  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    26   8.8  
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    26   8.8  

>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 294 RCLELLCEEAGSRIGPAFHRVPNTFQFNDTIKTIAK 187
           +C E L    G  +GP  H+V      N T K++AK
Sbjct: 470 KCFETLIHAIGDHLGPHLHKVSIYAPLNCTEKSLAK 505


>AC006729-5|AAK84599.2|  568|Caenorhabditis elegans Hypothetical
           protein Y24D9A.2 protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 41  QLLEAHQEITRLRIENKI--LRDHMETCSRSRKVPRLDT 151
           QLL+ + E+TR+ +E  I  L  H+    R R  P L+T
Sbjct: 102 QLLKDNSELTRINVEPNIITLNAHLNLLERIRDDPELNT 140


>U80837-8|AAB37908.1|  412|Caenorhabditis elegans Hypothetical
           protein F07E5.9 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 260 EPASSHKSSRHLLWAEENTIDISAENDLTSNGTYGTDCRNVSMNGNN 400
           EP  S KS +     +E+ +DIS  N +  NGT   +  N   NG N
Sbjct: 69  EPFPSTKSEKSNSTVDED-VDISDNNYVPLNGTNMANAANTDNNGYN 114


>AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical
           protein Y108F1.3 protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 41  QLLEAHQEITRLRIENKI--LRDHMETCSRSRKVPRLDT 151
           QLL+ + E+TR+ +E  I  L  H+    R R  P L T
Sbjct: 158 QLLKDNSELTRINVEPNIITLNAHLNLLKRIRNDPELKT 196


>Z92775-4|CAB07163.4|  501|Caenorhabditis elegans Hypothetical
           protein C06H5.6 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 260 EPASSHKSSRHLLWAEENTIDISAENDLTSNGTYG 364
           EP+SSH    + + A  N + + A+  LT+ G YG
Sbjct: 4   EPSSSHPPRSNSMSATFNYLHLDADKVLTAFGKYG 38


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical protein
            C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 8    EKKEYVTALEKQLLEAHQEITRLRIENKILRDHM 109
            E K+ ++ LEK++ +++  +   +I+N  LRD +
Sbjct: 922  ELKKQISILEKRIADSNSSLEECKIQNAELRDQL 955


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
            protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 8    EKKEYVTALEKQLLEAHQEITRLRIENKILRDHM 109
            E K+ ++ LEK++ +++  +   +I+N  LRD +
Sbjct: 922  ELKKQISILEKRIADSNSSLEECKIQNAELRDQL 955


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical protein
            C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 8    EKKEYVTALEKQLLEAHQEITRLRIENKILRDHM 109
            E K+ ++ LEK++ +++  +   +I+N  LRD +
Sbjct: 922  ELKKQISILEKRIADSNSSLEECKIQNAELRDQL 955


>AL132895-5|CAC35863.3|  501|Caenorhabditis elegans Hypothetical
           protein C06H5.6 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 260 EPASSHKSSRHLLWAEENTIDISAENDLTSNGTYG 364
           EP+SSH    + + A  N + + A+  LT+ G YG
Sbjct: 4   EPSSSHPPRSNSMSATFNYLHLDADKVLTAFGKYG 38


>AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical
           protein Y51H1A.6 protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 5   EEKKEYVTALEKQLLE-AHQEITRL-RIENKILRDHMETCSRSRKVP 139
           E+   + T  E++L   +H EI  L +I N  LR H E   R +KVP
Sbjct: 424 EQLLPHPTRFEEKLKNLSHVEIIELLQIINASLRKHQEVEPRGKKVP 470


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/41 (29%), Positives = 28/41 (68%)
 Frame = -1

Query: 158 ILTYLVSVPFYFYCMFPYDLEVFYFLSVAWLSLDELLIVVS 36
           I+T+  S+P++F    PY+ ++F F+  ++ ++  LLI+++
Sbjct: 29  IITF--SLPYHFTTT-PYEFQIFSFIRQSFCAIAVLLIILN 66


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 41  QLLEAHQEITRLRIENKILRDH 106
           Q+  AH EITR RIE ++  +H
Sbjct: 846 QMKRAHAEITRNRIEEEMRENH 867


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 41  QLLEAHQEITRLRIENKILRDH 106
           Q+  AH EITR RIE ++  +H
Sbjct: 824 QMKRAHAEITRNRIEEEMRENH 845


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 41  QLLEAHQEITRLRIENKILRDH 106
           Q+  AH EITR RIE ++  +H
Sbjct: 846 QMKRAHAEITRNRIEEEMRENH 867


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = +2

Query: 116 CSRSRKVPRLDTSILIPKKNIAVIFAMVFMVSLNWNVFGTRWNAGPILEPASSHKSSRHL 295
           C        L+ ++ + +  + ++ +M+FM+ L+W +    +   PI+  AS    + + 
Sbjct: 287 CQTMSDTVALNVNVFL-RNCVMLLGSMIFMMKLSWRLSLVTFILVPIIFVASKIFGTYYD 345

Query: 296 LWAEENTIDISAENDL 343
           L +E     I+  ND+
Sbjct: 346 LLSERTQDTIAESNDV 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,519
Number of Sequences: 27780
Number of extensions: 186313
Number of successful extensions: 549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)