Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D12
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0595 - 4430738-4430785,4430904-4432679                           23   2.8  
12_01_0827 - 7662180-7662192,7662451-7662764                           27   4.1  
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051...    27   4.1  
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748...    27   7.1  

>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 23.4 bits (48), Expect(2) = 2.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 8   APPPPPDDS 34
           APPPPP DS
Sbjct: 108 APPPPPPDS 116



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 2   HEAPPPPPD 28
           H  PPPPPD
Sbjct: 107 HAPPPPPPD 115


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 10  SAPAAGRLLNLAERAADLTPAPASGSRQA 96
           S P++  LL+L+ R+  L P+P + SRQA
Sbjct: 79  SRPSSLLLLSLSLRSMSLWPSPTTASRQA 107


>03_05_0044 +
           20203644-20204054,20204695-20204916,20205092-20205130,
           20206275-20206396,20206489-20206639,20207892-20207963,
           20208256-20208351,20208861-20208949,20209068-20209134,
           20210197-20210235,20210369-20210429,20210572-20210681,
           20210766-20210840,20210914-20210982,20213126-20213247,
           20214682-20214807,20214897-20215017,20215133-20215233,
           20215564-20215624,20216560-20216613,20217585-20217689
          Length = 770

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 247 YLHQKRRTGCGEYGVGCGLV 188
           YLH+K+  G G+YG  CG +
Sbjct: 565 YLHKKQSGGQGQYGRVCGYI 584


>03_02_0877 -
           12072996-12073285,12074312-12074615,12074699-12074871,
           12075299-12075434,12076327-12076788,12076882-12077189,
           12077724-12078105
          Length = 684

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 2   HEAPPPPPDDS*IWLSERLI 61
           H  PPPPPDD  + L + L+
Sbjct: 102 HHRPPPPPDDFTVALRKALM 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,535,915
Number of Sequences: 37544
Number of extensions: 80497
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)