Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D10
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 223 5e-59
AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical ... 29 2.3
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 29 3.1
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 4.0
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 4.0
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 4.0
Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 27 7.0
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 7.0
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 7.0
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 7.0
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 7.0
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 27 9.3
U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van gogh/... 27 9.3
U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van gogh/... 27 9.3
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 223 bits (546), Expect = 5e-59
Identities = 105/181 (58%), Positives = 140/181 (77%), Gaps = 1/181 (0%)
Frame = +2
Query: 23 KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 202
K+LK+ E +SQAL++LETN D+++QL+ELYI KE+EL NK +IIIYVP+P
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66
Query: 203 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 379
+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ KQKRPRSRTLT+V+
Sbjct: 67 QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126
Query: 380 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVT 559
DA L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+ F SVY+KLTG++VT
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVT 186
Query: 560 F 562
F
Sbjct: 187 F 187
>AC024214-8|AAF36070.2| 296|Caenorhabditis elegans Hypothetical
protein Y77E11A.9 protein.
Length = 296
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 407 GIPDLPIWRHIQKSVSWNGAFSVCWLHVSCGWAW 306
GIP+ + S++W+G + C+ +C AW
Sbjct: 5 GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 350 AFSVCWLHVSCGWAWAGSYGH 288
A SV W+ +SC + WAG G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 421 WQTHQSEARWLTTHQSASRQKPTDNY 498
W+ H+SE WLT Q ++ T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 421 WQTHQSEARWLTTHQSASRQKPTDNY 498
W+ H+SE WLT Q ++ T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 421 WQTHQSEARWLTTHQSASRQKPTDNY 498
W+ H+SE WLT Q ++ T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323
>Z48582-3|CAA88464.1| 401|Caenorhabditis elegans Hypothetical
protein F27E5.1 protein.
Length = 401
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 50 PDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY--VPMPKLKAFQK 223
PD ++ + S+ ++ + N DL + R I KA + E+H ++ Y +P + A++
Sbjct: 39 PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98
Query: 224 IQIRLVRELEK 256
I L+K
Sbjct: 99 IGNMTASALDK 109
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 29 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 208
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 209 KAFQKIQIRLVRELEKKFSGKHVVFV 286
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 29 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 208
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 209 KAFQKIQIRLVRELEKKFSGKHVVFV 286
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 29 LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 208
LK A P++ TSI Q L+ ++ + + E ++ +K+IE+H + +
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261
Query: 209 KAFQKIQIRLVRELEKKFSGKHVVFV 286
+ QK ++LV K F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 413 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 318
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 413 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 318
RP I D P+W ++ +++++ S+C +C
Sbjct: 842 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 873
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 413 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 318
RP I D P+W ++ +++++ S+C +C
Sbjct: 814 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 845
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 413 RPGIPDLPIWRHIQKSVSWNGAFSVCWLHVSC 318
RP I D P+W ++ +++++ S+C +C
Sbjct: 746 RPSIHDCPVWIELKINIAYDFMDSICQYITNC 777
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 27.1 bits (57), Expect = 9.3
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Frame = +2
Query: 41 AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 217
A + TFE+ +Q L EL+ A QL+ + + K KE+E H + P K
Sbjct: 394 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 447
Query: 218 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAI 388
+ Q+ +++ +K +V + + K K R + K R R +T A
Sbjct: 448 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 507
Query: 389 LEDLVFPA---------EIVGKRIRVKLDGSQLIKVHLDKNQ 487
L+ +V + E+ + V+L +++ K+H DK +
Sbjct: 508 LQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKE 549
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 27.1 bits (57), Expect = 9.3
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Frame = +2
Query: 41 AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 217
A + TFE+ +Q L EL+ A QL+ + + K KE+E H + P K
Sbjct: 60 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 113
Query: 218 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAI 388
+ Q+ +++ +K +V + + K K R + K R R +T A
Sbjct: 114 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 173
Query: 389 LEDLVFPA---------EIVGKRIRVKLDGSQLIKVHLDKNQ 487
L+ +V + E+ + V+L +++ K+H DK +
Sbjct: 174 LQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKE 215
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 27.1 bits (57), Expect = 9.3
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Frame = +2
Query: 41 AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 217
A + TFE+ +Q L EL+ A QL+ + + K KE+E H + P K
Sbjct: 394 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 447
Query: 218 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAI 388
+ Q+ +++ +K +V + + K K R + K R R +T A
Sbjct: 448 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 507
Query: 389 LEDLVFPA---------EIVGKRIRVKLDGSQLIKVHLDKNQ 487
L+ +V + E+ + V+L +++ K+H DK +
Sbjct: 508 LQSVVSSSQEEALKKEEELKKLKATVELQQAEIEKMHEDKKE 549
>U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform b protein.
Length = 529
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 82 SLRDRSLEGVGFYSTRFEDFRTHLE 8
S+++ + E + FY+TRF F HL+
Sbjct: 263 SIQEAATEILRFYTTRFSSFNIHLD 287
>U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform a protein.
Length = 532
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 82 SLRDRSLEGVGFYSTRFEDFRTHLE 8
S+++ + E + FY+TRF F HL+
Sbjct: 266 SIQEAATEILRFYTTRFSSFNIHLD 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,816
Number of Sequences: 27780
Number of extensions: 292974
Number of successful extensions: 833
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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