Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D08
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0131 + 888247-888771,889092-889154 33 0.14
03_05_0703 - 26942117-26942221,26943765-26945579 31 0.57
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 30 1.3
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 29 3.0
03_06_0013 - 31007580-31007657,31007795-31007876,31007963-310080... 28 4.0
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192... 28 4.0
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 5.3
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109... 27 7.0
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 27 9.2
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 9.2
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 27 9.2
03_05_0409 + 23957965-23958374,23960112-23960433 27 9.2
03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027 27 9.2
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -2
Query: 274 DLIAAVMTVPKTSIAQRVTFD--QRSPTVPSIRSYRRVVKTPNN*TTAFSIPEVVPSGSG 101
+L ++T P T+I+ F ++ PT P + P + T FS+ VP+G
Sbjct: 43 ELPPIIITTPPTAISGESDFSVLRKVPTGPDPITSDPPPPPPPSTPTQFSVLRKVPTGPD 102
Query: 100 YVTSDANSNPTGK*PVIKNPSS 35
+TSD P + PV++ S
Sbjct: 103 PITSDPPPPPLSEFPVLREVPS 124
>03_05_0703 - 26942117-26942221,26943765-26945579
Length = 639
Score = 31.1 bits (67), Expect = 0.57
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 99 YPEPEGTTSGILNAVVQLFGVLTTLLYERMLGTVGDRWSNVTLCAIL 239
+PE G G+L V L G + T LY + G D S V L A L
Sbjct: 152 FPEDRGVVLGLLKGFVGLSGAIFTQLYRAIYGADDDGASLVLLMAWL 198
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 445 LKVKLL*EWYKKMCWKLRHDADVKNI 522
LKV +L E + +M W+L+HD D+++I
Sbjct: 370 LKVWILDETFGEMKWELKHDKDMRHI 395
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 30 SILLGFFMTGYLPVGFEFASEVTYPEP-EGTTSGILNAVVQLFGVLTTLLYERMLGTVGD 206
++ + FF G PV + SE+ YPE G G+ V + ++ + ++G VG
Sbjct: 379 ALYIAFFSPGMGPVPWAVNSEI-YPEAYRGMCGGMSATVNWVSNLIVAQTFLSIVGLVGT 437
Query: 207 RWSNVTLCAILVLGTVITA 263
+ + + I VL + A
Sbjct: 438 GLTFLIIAGIAVLAFIFVA 456
>03_06_0013 -
31007580-31007657,31007795-31007876,31007963-31008065,
31008156-31008315,31009016-31009207,31009880-31010194
Length = 309
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +3
Query: 3 TRIGVVYLSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLYE 182
T+ G+++L L+ F + G GFE + + +L + +FG +L +
Sbjct: 124 TKSGMLFLEVSLIAFLLQGNETSGFESLARTFVISGAVVAADVLLKTIYVFGFGVSLFID 183
Query: 183 RMLGTVGDRWSNVTLCAILVLG 248
GT G +W L +++ G
Sbjct: 184 VDQGT-GGKWGLWFLHKLVLTG 204
>03_05_0612 +
26117306-26118045,26118151-26118680,26119247-26119278,
26119910-26121175
Length = 855
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 445 LKVKLL*EWYKKMCWKLRHDADVKNI 522
LKV +L E KM W+L+HD +++I
Sbjct: 289 LKVWILDETCSKMKWELKHDKHIRHI 314
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 207 RWSNVTLCAILVLGTVITAAIKSDLRRQAAQNNGVNL 317
RW A++VL T AA+ LRR AA G +L
Sbjct: 88 RWQVFVCGALIVLPTAAAAALLPRLRRAAAPLRGTDL 124
>03_01_0138 -
1089063-1089266,1089590-1089671,1089937-1090390,
1091094-1091634
Length = 426
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 299 EQWGKLTIATYTSKEKKSLLSF 364
++ GK TIA + SKE+KS SF
Sbjct: 280 QRLGKTTIAAWASKEEKSTTSF 301
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 238 SIAQRVTFDQRSPTVPSIRSYRRVVKTPNN*TTAFSIPEVVPSGSGYVTSDANS 77
S+A + FD + T PS ++R + P + S E+ +G D ++
Sbjct: 547 SLALKSWFDDSASTTPSSETFRYSTRRPEKVRKSLSPDEIADKSTGNAEEDKST 600
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 237 VSHKESHLTNDHQLYPASAHIEGSLKHRTTEQR 139
V HK+S ++ Y A L+H TEQR
Sbjct: 277 VKHKKSGISGSTNSYNAVVRENAQLRHEVTEQR 309
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3
Query: 15 VVYLSSILLGFFMTGYLPVGF 77
VVYLSSIL F GYLP F
Sbjct: 502 VVYLSSILSKFVDGGYLPFCF 522
>03_05_0409 + 23957965-23958374,23960112-23960433
Length = 243
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 445 LKVKLL*EWYKKMCWKLRHDADV 513
L+V L E Y +M W+L+HD D+
Sbjct: 182 LRVWFLNELYGQMTWELKHDNDL 204
>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
Length = 635
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 445 LKVKLL*EWYKKMCWKLRHDADV 513
L+V L E Y +M W+L+HD D+
Sbjct: 287 LRVWFLNELYGQMTWELKHDNDL 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,505
Number of Sequences: 37544
Number of extensions: 302313
Number of successful extensions: 610
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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