Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D07
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   156   1e-39
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   156   2e-39
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    29   0.48 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   2.6  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    26   3.4  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   4.5  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   5.9  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   7.8  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.8  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  156 bits (379), Expect = 1e-39
 Identities = 72/115 (62%), Positives = 87/115 (75%)
 Frame = +3

Query: 45  HPFHVIRIIKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 224
           HPFHV+RI KMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEA
Sbjct: 92  HPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEA 151

Query: 225 LRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 389
           LRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+  + G L
Sbjct: 152 LRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  156 bits (378), Expect = 2e-39
 Identities = 72/115 (62%), Positives = 87/115 (75%)
 Frame = +3

Query: 45  HPFHVIRIIKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 224
           HPFHV+RI KMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  IEA
Sbjct: 92  HPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEA 151

Query: 225 LRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 389
           LRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+  + G L
Sbjct: 152 LRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 42  LHPFHVIRIIKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 209
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 210 QVIEALRRAKFKFPGRQKIYVSK 278
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 438 KYFTHYVVHFGISSRHRGVHALGGT*RCIHR*QN 337
           KY  H+ VH      H  + ++ G  RCI +  N
Sbjct: 589 KYIHHFWVHTWFDKTHPDIESITGIIRCIDKVPN 622


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 475 FFFFALGVYYYFKIFYTLCSSF 410
           FF   LG +  FK+FY L  SF
Sbjct: 86  FFVECLGFFNLFKVFYPLIISF 107


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 145 VPWGFPNAPRIPV 107
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +1

Query: 304 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 390
           V +LRS+++ + L+++ ++SST   + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 182 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 84
           RH G+S  +++ C L +  +T    LE + S A
Sbjct: 94  RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -2

Query: 203 PTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFND 66
           P V    R   LS+ H R C    P +  HP   P       HF++
Sbjct: 141 PQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHHPPHPHFHN 186


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 287 APLLRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPS 108
           +PLL  I  L  R  + S ++ LN +         +  GLS+ H+RY +   P R    +
Sbjct: 92  SPLLSPISPLKLRFHKYSVSKQLNSV-------GKQGFGLSSNHSRYASPSSPARLARGA 144

Query: 107 L-EPISSS 87
           L E +S+S
Sbjct: 145 LGEELSNS 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,134
Number of Sequences: 5004
Number of extensions: 44356
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)