Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D07
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 161 2e-40
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 161 4e-40
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 157 6e-39
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.1
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027... 29 2.0
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 29 2.0
06_01_0499 - 3581145-3582425 29 2.6
06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21... 29 2.6
02_01_0759 - 5628913-5630870,5631023-5631047 29 2.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 3.4
09_06_0088 + 20774901-20775491,20776172-20776687 28 3.4
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745... 28 4.5
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 27 6.0
09_06_0319 - 22293869-22293906,22294539-22295808 27 6.0
09_02_0020 + 3042502-3042980,3043068-3043176,3043290-3043476,304... 27 6.0
08_02_0567 + 18769742-18769790,18769928-18771351 27 6.0
06_02_0084 - 11547820-11548773 27 6.0
03_04_0126 + 17504478-17505020,17505215-17505346 27 6.0
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 27 6.0
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 27 7.9
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 27 7.9
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274... 27 7.9
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 161 bits (392), Expect = 2e-40
Identities = 77/116 (66%), Positives = 88/116 (75%)
Frame = +3
Query: 42 LHPFHVIRIIKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE 221
+HPFHV+RI KMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR + E
Sbjct: 91 VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEE 150
Query: 222 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 389
ALRRAKFKFPGRQKI S+KWGFTK+ REE+ KL+ GR +DG N + HG L
Sbjct: 151 ALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 2 KNCGKDQFHIRMRTTP 49
KN GKD FH+R+R P
Sbjct: 78 KNAGKDAFHLRVRVHP 93
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 161 bits (390), Expect = 4e-40
Identities = 74/113 (65%), Positives = 86/113 (76%)
Frame = +3
Query: 45 HPFHVIRIIKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 224
HP+HV+RI KMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A EA
Sbjct: 399 HPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEA 458
Query: 225 LRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHG 383
LRRAKFKFPGRQ++ S KWGFT+++R+E+ KL+ GR DG N K HG
Sbjct: 459 LRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 157 bits (380), Expect = 6e-39
Identities = 73/108 (67%), Positives = 83/108 (76%)
Frame = +3
Query: 42 LHPFHVIRIIKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE 221
+HPFHV+RI KMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR E
Sbjct: 87 VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASE 146
Query: 222 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVK 365
ALRRAKFKFPGRQKI S+KWGFTK+ R+E+ +L+ GR DG N K
Sbjct: 147 ALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAK 194
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 175 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 83
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_04_0327 +
16700235-16700312,16701756-16701978,16702488-16702730,
16702815-16702865,16702965-16703225,16703319-16703371,
16703446-16703815,16703906-16704750
Length = 707
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 426 HYVVHFGISSRHRGVHALGGT*RCI 352
+Y+VHF + ++ +G LGGT CI
Sbjct: 260 YYIVHFFLRNKRQGWQLLGGTVLCI 284
>02_05_0902 + 32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 57 VIRIIKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 194
V R I +LSC G G+ +PQ AR + I S+RSS
Sbjct: 865 VDRAIHVLSCLGDKAKYASFDGSISRPQVLKARQGFKEQIRSLRSS 910
>06_01_0499 - 3581145-3582425
Length = 426
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 330 HHVASQIPHVRTW*SPTS*IHRSSGDQG 247
H A+++ HVR W SPTS + D G
Sbjct: 116 HGAAAELAHVRAWWSPTSHAAAADWDDG 143
>06_01_0021 -
214401-214613,214707-214790,214887-215041,215165-215234,
215334-215509,215631-215803,216715-216938
Length = 364
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 214 TCAFQRSLERTDIMGCPIRTRATVPWGFPNA--PRIPVWSLSAPAHDNILMMRMTWKGCS 41
T ++ ++ R D P R T+ + F +A PR+ W+L +P+ D L W G
Sbjct: 290 TKTYEATISRPDANE-PSRLSGTLAFMFESALIPRVCQWALDSPSRD--LDYYQCWIGLK 346
Query: 40 SH 35
SH
Sbjct: 347 SH 348
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -3
Query: 196 SLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNILMMRMTWKGCS 41
SLER DI CP+ T A V G PN + V S S +D +R + CS
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDG---LRAIGRSCS 284
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 129 GKPQGTVARVRIGQPIMSVRSSD 197
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_06_0088 + 20774901-20775491,20776172-20776687
Length = 368
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 238 LARRRASMT---CAFQRSLERTDIMGCPIRTRATVPWGFPNAPRIPVWSLSAPAHDNILM 68
L R +S+T C+ ++ T+++GCP+R V G P + R + P D +
Sbjct: 207 LELRESSITPIHCSDEQLAAVTEVLGCPVRLLPIVYLGLPLSVRKLGKADLQPMMDRLAK 266
Query: 67 MRMTWK 50
+WK
Sbjct: 267 SLASWK 272
>09_02_0339 +
7452967-7453068,7453281-7453339,7453889-7454701,
7455123-7455498,7455978-7456019
Length = 463
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 471 FFLLWECIIISKYF-THYVVHFGISSRH 391
F LW I++++YF TH V FG S H
Sbjct: 30 FKFLWFHIVLAEYFYTHSCVLFGFSEAH 57
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 27.5 bits (58), Expect = 6.0
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Frame = -3
Query: 256 RPGNLNLARRRASMTCAFQRSLERTDIMGCPIRTRATVPWGFPNAPRIPVWSLS----AP 89
R G +L R+A QR R P R + P +PVW L A
Sbjct: 15 RRGRQDLRLRQARRRRHHQRHRRRRGGQPAPNRRGTSSPKTLEKRRTLPVWQLKDDFLAV 74
Query: 88 AHDNILMMRMTWKGCSSHPD 29
HDN ++ + G H D
Sbjct: 75 LHDNQALILVGETGSGKHSD 94
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 129 GKPQGTVARVRIGQPIMSVRSSD 197
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>09_02_0020 +
3042502-3042980,3043068-3043176,3043290-3043476,
3043690-3043784
Length = 289
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +3
Query: 156 VRIGQPIMSVRSSDR---WKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLR 326
+R+G P S +R W + E R K GR+ ++WG ++ ++ R
Sbjct: 111 MRVGPPKQSDAGEERRGAWSRRSSEMWERRGEKRRGRKGSMRIQRWGQKRFSKKNINLHR 170
Query: 327 DAGRF 341
+A RF
Sbjct: 171 EAYRF 175
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 114 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 266
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 78 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 206
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>03_04_0126 + 17504478-17505020,17505215-17505346
Length = 224
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 241 NLARRRAS-MTCAFQRSLERTDIMGCPIRTRATVPWGFPNAPRIPVWSLSAPAHDNILMM 65
NLA+ + + C+ + LE +++GC ++ G P + R + D +
Sbjct: 86 NLAKNSFTPINCSETKILEVIEVLGCLVKDLPITYLGLPMSTRKLSKAQLLLMLDRMAKN 145
Query: 64 RMTWKGCSSHPDVEL 20
WK C PD L
Sbjct: 146 LAGWKSCLLSPDARL 160
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 81 SCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGR- 257
S G DR + G+P+ + VR P++ +++ W A + + + PG
Sbjct: 251 SSYGYDRSPKIVEMDTGRPKSRSSSVRTSPPVVDAGAAEEWYANSVSSPLLPFHQLPGAP 310
Query: 258 QKIYVSKKWGFTKYEREEFEKLRDA 332
+I F +Y+ EK R A
Sbjct: 311 PRISAPSARHFPEYDWCPLEKPRPA 335
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 22 VPHPDENYTPSMSSASLKCCRALELIGSRL 111
+PH TP + LKC R+ +++GS L
Sbjct: 1339 IPHDASAITPEAVISLLKCIRSWKMLGSAL 1368
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 271 YLRSGALPSTNVRNLRSYVMLDVLLTMDATSSTAQSMDPS 390
YL S ++++R LR Y +LD LL A + Q D S
Sbjct: 298 YLLSYGAAASSLRLLRKYGLLDFLLPFQAAYMSDQMKDKS 337
>01_06_0656 -
30926858-30927040,30927141-30927281,30927373-30927489,
30927696-30927784,30927870-30928010,30928084-30928171,
30928280-30928342,30928544-30928699,30928778-30928870,
30929095-30929176,30929426-30929493,30929575-30930633
Length = 759
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 309 EFEKLRDAGRFANDGCNVKYRPEHGPLDVWRKFQNELH 422
E EK GC V + P H +D RK N++H
Sbjct: 611 ELEKCTKLVEGGCTGCPVSFAPLHKSIDQLRKAANKIH 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,197
Number of Sequences: 37544
Number of extensions: 310047
Number of successful extensions: 922
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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