Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D07
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   3.9  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   3.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.1  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 292 PSTNVRNLRSYVMLDVLLTMDATSSTAQSMDPSMSGGNSKMNYIVCKI 435
           P T  R    ++M +  L +  T  T   + P +  GN K+N I+  +
Sbjct: 208 PMTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTV 255


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 292 PSTNVRNLRSYVMLDVLLTMDATSSTAQSMDPSMSGGNSKMNYIVCKI 435
           P T  R    ++M +  L +  T  T   + P +  GN K+N I+  +
Sbjct: 208 PMTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNCKLNDILLTV 255


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 11 GKDQFHIRMRTTPLPCH 61
          G  + HIR  T P  CH
Sbjct: 30 GALKMHIRTHTLPCKCH 46


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +2

Query: 137 PRHSSACAYWTAHYVCTL 190
           P+  +   YW+ +++CT+
Sbjct: 31  PKDHNGSIYWSMYHLCTV 48


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/26 (23%), Positives = 13/26 (50%)
 Frame = -3

Query: 472 FFFALGVYYYFKIFYTLCSSFWNFLQ 395
           +    G++ YF   + +  S+W  +Q
Sbjct: 216 YLVCYGIWVYFVPLFLIIYSYWFIIQ 241


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/26 (23%), Positives = 13/26 (50%)
 Frame = -3

Query: 472 FFFALGVYYYFKIFYTLCSSFWNFLQ 395
           +    G++ YF   + +  S+W  +Q
Sbjct: 92  YLVCYGIWVYFVPLFLIIYSYWFIIQ 117


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 67  MRMTWKGCSSHPDVELIFT 11
           ++++W+G  S   V+LIFT
Sbjct: 248 IKVSWRGNYSCLKVDLIFT 266


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 67  MRMTWKGCSSHPDVELIFT 11
           ++++W+G  S   V+LIFT
Sbjct: 299 IKVSWRGNYSCLKVDLIFT 317


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 67  MRMTWKGCSSHPDVELIFT 11
           ++++W+G  S   V+LIFT
Sbjct: 248 IKVSWRGNYSCLKVDLIFT 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,912
Number of Sequences: 438
Number of extensions: 2821
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)