Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D05
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   0.54 
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   1.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   2.9  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    23   5.1  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    23   6.7  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    23   6.7  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 122 AWGSFTTTSPTVTWVVLTMCSCRRLS 45
           +W SF+ +SP V W+  T  S   LS
Sbjct: 195 SWLSFSKSSPVVLWLTFTRISSAGLS 220


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 4   VPAVNPVTGSPYAADKRRQLHIVNTTHVTVG 96
           +PA  P  GSP  ADK     I N     VG
Sbjct: 25  LPAYYPHPGSPLYADKELYARIANAPKKLVG 55


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 143 TAPDTTSAWGSFTTTSPTVTWVVLTMCSCRRLSAA*GEPVTGFTAG 6
           T P T ++  SFTTT    T  ++ +      S+    P T FT G
Sbjct: 862 TEPTTFTSTFSFTTTIIGGTTTIIPVNPGNPSSSVSAPPTTSFTPG 907


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = +1

Query: 31  SPYAADKRRQLHIVNTTHVTVGDVVVKEPHAEVVSGAVDLHPINGVQQRDEGQEQSAP 204
           +P    +  Q H+V    V    +  + PH       V L P N     DE   +SAP
Sbjct: 160 NPVLTTEYTQQHLVQCKMVLENHITSRFPHFYTKLPDVSLVPNNMPHYPDEVTAKSAP 217


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 146 STAPDTTSAWGSFTTTSPTVTWVVLTMCSCRRLSAA*GEPVTGFTAG 6
           +T+   TSA GS TTTS +      +  S    S+A      GFTAG
Sbjct: 364 ATSGSATSATGSATTTSYSSDSSASSSSSSSHESSA---ASNGFTAG 407


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 161 LIGWRSTAPDTTSAWG 114
           LI W STAP   + WG
Sbjct: 928 LIIWLSTAPGLDAQWG 943


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,181
Number of Sequences: 5004
Number of extensions: 15896
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)