Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_D05
         (259 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL834258-1|CAD38933.1| 1084|Homo sapiens hypothetical protein pr...    30   1.2  
AL603863-3|CAM17491.1| 1237|Homo sapiens protocadherin 9 protein.      30   1.2  
AL355173-2|CAM17290.1| 1237|Homo sapiens protocadherin 9 protein.      30   1.2  
AL138814-1|CAM13066.1| 1237|Homo sapiens protocadherin 9 protein.      30   1.2  
AL136999-2|CAM13771.1| 1237|Homo sapiens protocadherin 9 protein.      30   1.2  
BC030200-1|AAH30200.1|   81|Homo sapiens MGC34829 protein protein.     28   4.7  

>AL834258-1|CAD38933.1| 1084|Homo sapiens hypothetical protein
            protein.
          Length = 1084

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 31   SPYAADKRRQLHIVNTTHVTVGDVVVKEPHAEVVSGAVDLHPINGVQQRDEGQEQSAP 204
            S Y + +R   H+ + +  +  D  + + H  V SG +  HP+  VQ +DE  +Q++P
Sbjct: 890  SHYESQRRVTFHLPDGSQESCSDSGLGD-HEPVGSGTLISHPLPLVQPQDEFYDQASP 946


>AL603863-3|CAM17491.1| 1237|Homo sapiens protocadherin 9 protein.
          Length = 1237

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 31   SPYAADKRRQLHIVNTTHVTVGDVVVKEPHAEVVSGAVDLHPINGVQQRDEGQEQSAP 204
            S Y + +R   H+ + +  +  D  + + H  V SG +  HP+  VQ +DE  +Q++P
Sbjct: 1043 SHYESQRRVTFHLPDGSQESCSDSGLGD-HEPVGSGTLISHPLPLVQPQDEFYDQASP 1099


>AL355173-2|CAM17290.1| 1237|Homo sapiens protocadherin 9 protein.
          Length = 1237

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 31   SPYAADKRRQLHIVNTTHVTVGDVVVKEPHAEVVSGAVDLHPINGVQQRDEGQEQSAP 204
            S Y + +R   H+ + +  +  D  + + H  V SG +  HP+  VQ +DE  +Q++P
Sbjct: 1043 SHYESQRRVTFHLPDGSQESCSDSGLGD-HEPVGSGTLISHPLPLVQPQDEFYDQASP 1099


>AL138814-1|CAM13066.1| 1237|Homo sapiens protocadherin 9 protein.
          Length = 1237

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 31   SPYAADKRRQLHIVNTTHVTVGDVVVKEPHAEVVSGAVDLHPINGVQQRDEGQEQSAP 204
            S Y + +R   H+ + +  +  D  + + H  V SG +  HP+  VQ +DE  +Q++P
Sbjct: 1043 SHYESQRRVTFHLPDGSQESCSDSGLGD-HEPVGSGTLISHPLPLVQPQDEFYDQASP 1099


>AL136999-2|CAM13771.1| 1237|Homo sapiens protocadherin 9 protein.
          Length = 1237

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 31   SPYAADKRRQLHIVNTTHVTVGDVVVKEPHAEVVSGAVDLHPINGVQQRDEGQEQSAP 204
            S Y + +R   H+ + +  +  D  + + H  V SG +  HP+  VQ +DE  +Q++P
Sbjct: 1043 SHYESQRRVTFHLPDGSQESCSDSGLGD-HEPVGSGTLISHPLPLVQPQDEFYDQASP 1099


>BC030200-1|AAH30200.1|   81|Homo sapiens MGC34829 protein protein.
          Length = 81

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -3

Query: 170 CTPLIGWRSTAPDTTSAWGSFTTTSPTVTWVVLTMCSCRRLSAA 39
           C  +I W   AP   S   +  + SPT+   VLT C C RLSA+
Sbjct: 22  CPSVIAW---APGCWSLLPALAS-SPTLCPGVLTSCPCMRLSAS 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.311    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,066,296
Number of Sequences: 237096
Number of extensions: 740681
Number of successful extensions: 5100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5100
length of database: 76,859,062
effective HSP length: 63
effective length of database: 61,922,014
effective search space used: 1362284308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)