Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D03
(207 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 0.34
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 0.78
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe... 26 0.78
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 1.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 24 3.2
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 4.2
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 23 5.5
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 23 7.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 22 9.6
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 22 9.6
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 22 9.6
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 22 9.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 0.34
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 57 PAGPIAPVAPTVPVGMGNHPEAAMLPRGA 143
P P AP+AP +P GM P A LP A
Sbjct: 448 PLPPSAPIAPPLPAGM---PAAPPLPPAA 473
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 0.78
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 54 LPAGPIAPVAPTVPVGMGNHPEAAMLP 134
+P P+APVAP VP + P A ++P
Sbjct: 574 VPQPPVAPVAPEVP-SVPQPPVAPVVP 599
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 54 LPAGPIAPVAPTVPVGMGNHPEAAMLP 134
+P P+APVAP VP + P ++P
Sbjct: 604 VPQPPVAPVAPEVP-SVPQRPAVPVVP 629
>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 0.78
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 197 FFLRLISVLLNQIIILLFSASW 132
F++ LI LLN + +LF+ SW
Sbjct: 96 FYVYLIDFLLNVLFTVLFALSW 117
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 143 SASWQHGCLRMVSHPHRHSWGHRCNWP 63
S SW+H SHP S G++ P
Sbjct: 243 SGSWRHTNFHSTSHPRAASIGNKSGIP 269
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.8 bits (49), Expect = 3.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 30 KARAAEERLPAGPIAPVAPTVPVGMGNHPEAAMLPRGA 143
KA+A+ + + P+AP A N P AAM P A
Sbjct: 330 KAKASIKENASQPVAPSASQREHSAVNSPAAAMSPSTA 367
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 18 ATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEAAMLP 134
+T + A + P+ PI P P + + +GN A+LP
Sbjct: 37 STPKQVNQARPKFPS-PITPTLPEMHLPVGNSKFQAVLP 74
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 42 AEERLPAGPIAPVAPTVPVGMGNH 113
A + P+G P A P G+GNH
Sbjct: 376 ASVKQPSGFSPPSAVAPPPGLGNH 399
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -2
Query: 98 HRHSWGHRCNWPRRQPFLRRTCLYMSRTAQP 6
H +GH WP + R + LY + + P
Sbjct: 102 HCTDYGHSYEWPYFRSLRRESMLYHTSGSYP 132
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 166 IKLLYYFLAPLGSMAASGW 110
++ +YYFL + S++ S W
Sbjct: 1122 LRFMYYFLPTVFSLSGSYW 1140
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = -2
Query: 197 FFLRLISVLLNQIIILLFSASW 132
F + L +++L ++ +FSA W
Sbjct: 87 FLISLFALILPGVLFFIFSAFW 108
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 42 AEERLPAGPIAPVAPTV 92
AE PA +AP APTV
Sbjct: 399 AEVAKPAPVVAPAAPTV 415
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/41 (24%), Positives = 16/41 (39%)
Frame = -2
Query: 206 FFFFFLRLISVLLNQIIILLFSASWQHGCLRMVSHPHRHSW 84
F+ FF + +L + +I + H L H H W
Sbjct: 149 FYLFFSIALFLLFSDFLIYWIHRALHHRWLYAPLHKLHHKW 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,057
Number of Sequences: 5004
Number of extensions: 9352
Number of successful extensions: 39
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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