Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D03
(207 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 27 2.1
08_02_1004 - 23461798-23462024,23462340-23462415,23463479-234636... 27 2.7
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 26 3.6
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 26 4.8
05_01_0068 + 475647-476006 26 4.8
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 26 4.8
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 25 8.4
09_02_0242 + 6189136-6189429,6190308-6190445,6191276-6191449 25 8.4
08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108... 25 8.4
06_01_0746 + 5580755-5582119 25 8.4
04_04_0500 - 25677767-25680850 25 8.4
03_05_0595 + 25991158-25991252,25991379-25991520,25991848-25991925 25 8.4
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 181 LVFY*IKLLYYFLAPLGSMAASGWFPIPTGTVGATG 74
L+FY + L +F+ + GW P G+ A G
Sbjct: 13 LLFYFLSSLLFFIREASGRSGDGWVAGPRGSEAAAG 48
>08_02_1004 -
23461798-23462024,23462340-23462415,23463479-23463610,
23463927-23464004,23464919-23465320
Length = 304
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 39 AAEERLPAGPIAPVAPTVPVGMGNHPEAAM 128
A+ PAGP A VA + G+HP AA+
Sbjct: 27 ASASLAPAGPAAAVARQIRRNDGHHPGAAV 56
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = -2
Query: 101 PHRHSWGHRCNWPRRQPFLRRT-CL 30
PH H W R WP LRR CL
Sbjct: 74 PHLHRWYSRLRWPLLAGRLRRVGCL 98
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 148 FLAPLGSMAASGWFPIPTGTVGATGAIGPAG 56
+LA S AS W P+P G GA AG
Sbjct: 21 YLAAAASTPASVWLPVPRG-AGAVAVCRAAG 50
>05_01_0068 + 475647-476006
Length = 119
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 143 SASWQHGCLRMVSHPHRHSWGHRCN 69
S S +H CLR++S HR WG N
Sbjct: 48 STSPRHRCLRLLS--HRPKWGGAAN 70
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 30 KARAAEERLPAGPIAPVAPTVPVGMGNHPE 119
K +ERL GP P AP VP P+
Sbjct: 173 KIARRDERLAQGPREPAAPAVPAQTAAAPK 202
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -2
Query: 137 SWQHGCLRMVSHPHRHSWGHRCNWPRRQPFLRRTCLYMSRTAQPR 3
SW+ +R+ +H H G + +W RR L + + A R
Sbjct: 543 SWRQSSMRIFAHEHDEVGGVQWSW-RRPLLLEEAAVALKEAAGAR 586
>09_02_0242 + 6189136-6189429,6190308-6190445,6191276-6191449
Length = 201
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 112 WFPIPTGTVGATGAIGPAG 56
W PI G G G +GP G
Sbjct: 36 WVPIAAGGAGYAGMMGPMG 54
>08_02_0917 -
22609543-22609852,22609925-22610266,22610596-22610858,
22611318-22612349
Length = 648
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 84 PTVPVGMGNHPEAAMLPRGA 143
PTVP+ G H +A++LP A
Sbjct: 298 PTVPIPDGAHFDASLLPANA 317
>06_01_0746 + 5580755-5582119
Length = 454
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 9 LRRATHVKARAAEERLPAGPIAPVAPTVPVGMG 107
+RR H +ARA L A APV V G+G
Sbjct: 49 VRRMAH-RARARRRLLSAAEAAPVRARVRAGLG 80
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 30 KARAAEERLPAGPIAPVAPTVPVGMGNHPEAA 125
K RA + P P +AP +G+HP+A+
Sbjct: 12 KPRANQPPPPPPPPFRLAPAAVAALGSHPDAS 43
>03_05_0595 + 25991158-25991252,25991379-25991520,25991848-25991925
Length = 104
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 146 FSASWQHGCLRMVSHP 99
+ SW GCL +SHP
Sbjct: 29 YGKSWHIGCLEGISHP 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,140,567
Number of Sequences: 37544
Number of extensions: 80451
Number of successful extensions: 359
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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