Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D03
(207 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen... 29 3.6
Y00724-1|CAA68709.1| 765|Homo sapiens protein ( Human mRNA for ... 29 3.6
L12141-1|AAA58477.1| 347|Homo sapiens fork head-related protein... 29 3.6
BT006720-1|AAP35366.1| 350|Homo sapiens forkhead box A3 protein. 29 3.6
BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha... 29 3.6
BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha... 29 3.6
BC016024-1|AAH16024.1| 350|Homo sapiens forkhead box A3 protein. 29 3.6
AK223473-1|BAD97193.1| 350|Homo sapiens forkhead box A3 variant... 29 3.6
AF176114-1|AAD51980.1| 350|Homo sapiens hepatocyte nuclear fact... 29 3.6
AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen prot... 29 3.6
AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen... 28 4.8
>Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen
protein.
Length = 1366
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 139 PLGSMAASGW--FPIPTGTVGATGAIGPAG 56
P+GS G+ P P G +GA G GPAG
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 277
>Y00724-1|CAA68709.1| 765|Homo sapiens protein ( Human mRNA for
prepro-alpha2(I) collagen (COL1A2). ).
Length = 765
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 139 PLGSMAASGW--FPIPTGTVGATGAIGPAG 56
P+GS G+ P P G +GA G GPAG
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 277
>L12141-1|AAA58477.1| 347|Homo sapiens fork head-related protein
protein.
Length = 347
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 54 LPAGPIAPVAPTVPVG 101
LP+GP+AP AP P+G
Sbjct: 59 LPSGPLAPPAPAAPLG 74
>BT006720-1|AAP35366.1| 350|Homo sapiens forkhead box A3 protein.
Length = 350
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 54 LPAGPIAPVAPTVPVG 101
LP+GP+AP AP P+G
Sbjct: 60 LPSGPLAPPAPAAPLG 75
>BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 139 PLGSMAASGW--FPIPTGTVGATGAIGPAG 56
P+GS G+ P P G +GA G GPAG
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 277
>BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 139 PLGSMAASGW--FPIPTGTVGATGAIGPAG 56
P+GS G+ P P G +GA G GPAG
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 277
>BC016024-1|AAH16024.1| 350|Homo sapiens forkhead box A3 protein.
Length = 350
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 54 LPAGPIAPVAPTVPVG 101
LP+GP+AP AP P+G
Sbjct: 60 LPSGPLAPPAPAAPLG 75
>AK223473-1|BAD97193.1| 350|Homo sapiens forkhead box A3 variant
protein.
Length = 350
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 54 LPAGPIAPVAPTVPVG 101
LP+GP+AP AP P+G
Sbjct: 60 LPSGPLAPPAPAAPLG 75
>AF176114-1|AAD51980.1| 350|Homo sapiens hepatocyte nuclear
factor-3 gamma protein.
Length = 350
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 54 LPAGPIAPVAPTVPVG 101
LP+GP+AP AP P+G
Sbjct: 60 LPSGPLAPPAPAAPLG 75
>AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen
protein.
Length = 1186
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 139 PLGSMAASGW--FPIPTGTVGATGAIGPAG 56
P+GS G+ P P G +GA G GPAG
Sbjct: 68 PIGSAGPPGFPGAPGPKGEIGAVGNAGPAG 97
>AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen
protein.
Length = 1366
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 139 PLGSMAASGW--FPIPTGTVGATGAIGPAG 56
P+GS G+ P P G +GA G GPAG
Sbjct: 248 PIGSAGPPGFPGAPGPKGEIGAIGNAGPAG 277
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,971,345
Number of Sequences: 237096
Number of extensions: 455423
Number of successful extensions: 3600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3573
length of database: 76,859,062
effective HSP length: 47
effective length of database: 65,715,550
effective search space used: 1380026550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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