Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D03
(207 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 1.2
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 1.2
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 1.2
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 1.2
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 1.2
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 2.0
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 21 2.0
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 2.0
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 2.0
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 2.0
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 2.0
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 2.0
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 2.0
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 2.0
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 2.0
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 2.0
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 2.0
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 20 2.7
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 20 2.7
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 20 2.7
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 20 2.7
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 20 2.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 20 2.7
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 20 2.7
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 20 2.7
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 20 2.7
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 20 3.5
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 20 3.5
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 20 3.5
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 20 3.5
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 20 3.5
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 20 3.5
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 20 3.5
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 19 6.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 19 6.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 19 6.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 19 6.2
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 19 6.2
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 19 8.2
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 19 8.2
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 19 8.2
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 19 8.2
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 19 8.2
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 19 8.2
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 19 8.2
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 1.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VPV GN P +M P
Sbjct: 114 PVPVPVPVYYGNFPPRSMGP 133
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 1.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VPV GN P +M P
Sbjct: 114 PVPVPVPVYYGNFPPRSMGP 133
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 1.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VPV GN P +M P
Sbjct: 114 PVPVPVPVYYGNFPPRSMGP 133
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 1.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P +M P
Sbjct: 362 PVPVPVPIYCGNFPPRSMEP 381
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 1.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VPV GN P +M P
Sbjct: 347 PVPVPVPVYYGNFPPRSMGP 366
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 20.6 bits (41), Expect = 2.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VPV GN P M P
Sbjct: 119 PVPVPVPVYCGNFPPRPMGP 138
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 120 PVPVPVPIYCGNFPSRPMGP 139
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 120 PVPVPVPIYCGNFPSRPMGP 139
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 120 PVPVPVPIYCGNFPSRPMGP 139
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 120 PVPVPVPIYCGNFPSRPMGP 139
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 120 PVPVPVPIYCGNFPSRPMGP 139
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 120 PVPVPVPIYCGNFPSRPMGP 139
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 120 PVPVPVPIYCGNFPSRPMGP 139
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.6 bits (41), Expect = 2.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VPV GN P M P
Sbjct: 123 PVPVPVPVYCGNFPPRPMGP 142
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.6 bits (41), Expect = 2.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VPV GN P M P
Sbjct: 123 PVPVPVPVYCGNFPPRPMGP 142
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 123 PVPVPVPIYCGNFPSRPMGP 142
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 20.6 bits (41), Expect = 2.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 343 PVPVPVPIHCGNFPPRPMGP 362
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 117 PVPVPVPIYCGNFPPRPMGP 136
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 117 PVPVPVPIYCGNFPPRPMGP 136
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 128 PVPVPVPIYCGNFPPRPMGP 147
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 334 PVPVPVPIYCGNFPPRPMGP 353
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 345 PVPVPVPIYCGNFPPRPMGP 364
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 363 PVPVPVPIYCGNFPPRPMGP 382
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 337 PVPVPVPIYYGNFPPRPMGP 356
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 355 PVPVPVPIYCGNFPPRPMGP 374
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 20.2 bits (40), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 365 PVPVPVPIYCGNFPPRPMGP 384
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 19.8 bits (39), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
P+ VP+ GN P M P
Sbjct: 120 PIPVPVPIYCGNFPPRPMGP 139
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 19.8 bits (39), Expect = 3.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV VP+ GN P M P
Sbjct: 118 PVPIPVPIYCGNFPPRPMGP 137
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 19.8 bits (39), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
P+ VP+ GN P M P
Sbjct: 337 PIPVPVPIYCGNFPPRPMGP 356
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 19.8 bits (39), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV +P+ GN P M P
Sbjct: 333 PVPVPIPIYCGNFPPRPMGP 352
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 19.8 bits (39), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV +P+ GN P M P
Sbjct: 344 PVPVPIPIYCGNFPPRPMGP 363
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 19.8 bits (39), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV +P+ GN P M P
Sbjct: 344 PVPVPIPIYCGNFPPRPMGP 363
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 19.8 bits (39), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
PV +P+ GN P M P
Sbjct: 333 PVPVPIPIYCGNFPPRPMGP 352
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 19.0 bits (37), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 200 FFFLRLISVLLNQIIILLFS 141
+FFL LIS + I L+F+
Sbjct: 168 WFFLDLISSIPLDYIFLIFN 187
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 19.0 bits (37), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 200 FFFLRLISVLLNQIIILLFS 141
+FFL LIS + I L+F+
Sbjct: 168 WFFLDLISSIPLDYIFLIFN 187
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 19.0 bits (37), Expect = 6.2
Identities = 5/8 (62%), Positives = 6/8 (75%)
Frame = -2
Query: 101 PHRHSWGH 78
PH H+ GH
Sbjct: 414 PHHHTMGH 421
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 19.0 bits (37), Expect = 6.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 200 FFFLRLISVLLNQIIILLFS 141
+FFL LIS + I L+F+
Sbjct: 168 WFFLDLISSIPLDYIFLIFN 187
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 19.0 bits (37), Expect = 6.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1
Query: 103 WETIRRQPCCQEA 141
W+ R CCQE+
Sbjct: 69 WQMERSCMCCQES 81
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 8.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
P+ VP+ GN P + P
Sbjct: 122 PIPVPVPIYCGNFPPRPLGP 141
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 8.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
P+ VP+ GN P + P
Sbjct: 122 PIPVPVPIYCGNFPPRPLGP 141
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 8.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
P+ VP+ GN P + P
Sbjct: 122 PIPVPVPIYCGNFPPRPLGP 141
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 8.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = +3
Query: 75 PVAPTVPVGMGNHPEAAMLP 134
P+ VP+ GN P + P
Sbjct: 122 PIPVPVPIYCGNFPPRPLGP 141
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 18.6 bits (36), Expect = 8.2
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = -2
Query: 110 VSHPHRH 90
V HPH+H
Sbjct: 18 VEHPHQH 24
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 18.6 bits (36), Expect = 8.2
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Frame = +3
Query: 21 THVKARAAEERLPAGPIA---PVAPTVPVG 101
T VKA E A P P+VPVG
Sbjct: 31 TLVKAETPEHLAGTSTTAAATPTPPSVPVG 60
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 18.6 bits (36), Expect = 8.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 101 PHRHSWGHRCNWPRRQPFL 45
P R W HR +R+P L
Sbjct: 979 PFRGFWHHRLAEIKRRPDL 997
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,360
Number of Sequences: 438
Number of extensions: 936
Number of successful extensions: 55
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used: 2912559
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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