Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D02
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 68 4e-13
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 59 1e-10
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 33 0.008
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 1.2
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 26 1.2
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 1.6
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 2.8
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 3.7
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 3.7
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 3.7
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 24 4.8
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 24 4.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 24 6.4
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.5
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 23 8.5
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 67.7 bits (158), Expect = 4e-13
Identities = 30/46 (65%), Positives = 39/46 (84%)
Frame = +2
Query: 182 VMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
VMG +AI+F+S GAAYGTAK+G GI+AM V+RP+ I+K+ IPVVM
Sbjct: 15 VMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVM 60
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 59.3 bits (137), Expect = 1e-10
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +2
Query: 188 GAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
G ++++FS LGA YGTA +G GIAA+ RPE +MKS+IPVVM
Sbjct: 17 GVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVM 60
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 33.5 bits (73), Expect = 0.008
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 182 VMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVV 316
++G AS + F +GAA+G GT I AV P K++I ++
Sbjct: 47 LLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISII 91
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 161 IGFSAIFLECGSILQVPKTLMTICTHSLHET 69
+ S +F CG I+ V K IC LH+T
Sbjct: 355 VQISKLF-SCGRIVSVSKNCADICVWDLHDT 384
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 1.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 120 TGPKNSDDYLHTL 82
TGP N+DDY+H +
Sbjct: 369 TGPSNTDDYIHRI 381
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 TFLWRL-WGRRLPSSSAPLVLHMAQPSQAPVLPP 266
T +W + + + LP SSAP + A Q P+ PP
Sbjct: 202 TRIWEMIYNQCLPDSSAPTIDFPALFMQGPLAPP 235
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Frame = +2
Query: 104 EFLGPVK------YSHIQEKWPKIQSMDLSLEVMG 190
+FLG VK + ++QE W K++ +DL+ + G
Sbjct: 247 KFLGSVKITPIFLHEYVQEAWYKLEPLDLTKSLEG 281
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 3.7
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -2
Query: 303 MDFMICSGRITAMAAIPVPDLAVPYAAPREL 211
++ ++ +G ++ +P+ DLA Y A R++
Sbjct: 283 LEAIVATGAKVVLSKLPIGDLATQYFADRDI 313
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 3.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 284 QAASPPWRQYRCLTWL 237
Q ++PPW C +WL
Sbjct: 448 QGSAPPWHYIPCQSWL 463
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
3|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 214 AEDDGRRRPHNLQRKVHRLDFRPFFLNVGVFYR 116
+E+ RR+ L+ VH ++ R FF++V +F R
Sbjct: 922 SEEMTRRKQLLLKDPVHSVNSRSFFISVFMFCR 954
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 146 WPKIQSMDLSLEVMGAASAIIFSSLGAAYGT 238
WP+I ++ L+ V ++ S+ A YGT
Sbjct: 289 WPQIITVPLAFGVTSLIGVLVSSASKAIYGT 319
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 71 FRGVSVCR*SSEFLGPVKYSHIQEK 145
F G S C + F G V Y H+ E+
Sbjct: 515 FHGNSPCALLANFWGSVNYGHVLER 539
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 277 HHRHGGNTGA*LGCAICSTKGAEDDGRRRPHNL 179
HH HGG +G+ G S +G + + P +L
Sbjct: 933 HHGHGGMSGSHRGSQRGSRRGGGERDKPDPSSL 965
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 23.4 bits (48), Expect = 8.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 153 KSNLWTFLWRLW 188
KSN W+ +WR W
Sbjct: 441 KSNRWSEVWRRW 452
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 196 VCHHLQLPWCCIWHSQVRH 252
V HL L W C+W +Q H
Sbjct: 71 VAPHL-LKWTCVWPNQSSH 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,700
Number of Sequences: 5004
Number of extensions: 30978
Number of successful extensions: 105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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