Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D02
(319 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 71 2e-13
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 71 2e-13
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 71 2e-13
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 71 2e-13
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 66 5e-12
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 66 5e-12
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 27 3.9
U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane r... 27 3.9
AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell... 27 3.9
AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell... 27 3.9
U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical pr... 26 6.8
AC024845-7|AAF60849.2| 422|Caenorhabditis elegans Hypothetical ... 26 6.8
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = +2
Query: 185 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+IPV+M
Sbjct: 20 MGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIM 64
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = +2
Query: 185 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+IPV+M
Sbjct: 20 MGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIM 64
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = +2
Query: 185 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+IPV+M
Sbjct: 20 MGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIM 64
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 70.9 bits (166), Expect = 2e-13
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = +2
Query: 185 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
MGAASA IF+ LGAAYGTAKS GI +M VMRPE IMKS+IPV+M
Sbjct: 20 MGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIM 64
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 66.1 bits (154), Expect = 5e-12
Identities = 29/45 (64%), Positives = 39/45 (86%)
Frame = +2
Query: 185 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
+G SA+ F++ G+AYGTAK+GTGIA+MAV RP+ +MK+IIPVVM
Sbjct: 28 LGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVM 72
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 66.1 bits (154), Expect = 5e-12
Identities = 29/45 (64%), Positives = 39/45 (86%)
Frame = +2
Query: 185 MGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
+G SA+ F++ G+AYGTAK+GTGIA+MAV RP+ +MK+IIPVVM
Sbjct: 28 LGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVM 72
>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
protein F57C7.1b protein.
Length = 1087
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 300 DFMICSGRITAMAAIPVPDLAVPYAAPRELKMMADAAPITSKE 172
D + + + A+ V D+AV A+P E + A+P++ E
Sbjct: 31 DETLIASKTIQTGAVQVNDIAVAEASPAETDAKSSASPVSGPE 73
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
protein F57C7.1a protein.
Length = 1209
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 300 DFMICSGRITAMAAIPVPDLAVPYAAPRELKMMADAAPITSKE 172
D + + + A+ V D+AV A+P E + A+P++ E
Sbjct: 31 DETLIASKTIQTGAVQVNDIAVAEASPAETDAKSSASPVSGPE 73
>U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane
receptor protein.
Length = 525
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 226 STKGAEDDGRRRPHNLQRKVHRLD 155
+ K +EDDG R ++QR+V RL+
Sbjct: 157 AAKESEDDGNDRVEDIQREVDRLN 180
>AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell
migration protein1, isoform b protein.
Length = 529
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 226 STKGAEDDGRRRPHNLQRKVHRLD 155
+ K +EDDG R ++QR+V RL+
Sbjct: 157 AAKESEDDGNDRVEDIQREVDRLN 180
>AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell
migration protein1, isoform a protein.
Length = 525
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 226 STKGAEDDGRRRPHNLQRKVHRLD 155
+ K +EDDG R ++QR+V RL+
Sbjct: 157 AAKESEDDGNDRVEDIQREVDRLN 180
>U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical
protein C01F1.1 protein.
Length = 481
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 220 KGAEDDGRRRPHNLQRKVHRLDFRPF 143
K A ++ RR+ + Q K +RLD +P+
Sbjct: 79 KAAREEARRKKYGRQSKKYRLDNQPW 104
>AC024845-7|AAF60849.2| 422|Caenorhabditis elegans Hypothetical
protein Y65B4BL.1 protein.
Length = 422
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 146 IFLECGSILQVPKTLMTICTHSLHETTLAQTNMAQALQTQ 27
+FL C QVP ++CT+ E A+T + QA+Q +
Sbjct: 303 VFLSCCR-QQVPSNCHSLCTYEHREHVAAET-LIQAIQQE 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,560,812
Number of Sequences: 27780
Number of extensions: 178611
Number of successful extensions: 477
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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