Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_D02
(319 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synth... 86 8e-20
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 2.1
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 2.1
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 2.7
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 2.7
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 2.7
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 3.6
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 20 6.3
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 20 6.3
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 20 6.3
DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate r... 20 8.3
>AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synthase
16 kDa proteolipidsubunit protein.
Length = 156
Score = 86.2 bits (204), Expect = 8e-20
Identities = 43/46 (93%), Positives = 45/46 (97%)
Frame = +2
Query: 182 VMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVM 319
VMGAASAIIFS+LGAAYGTAKSGTGIAAM+VMRPE IMKSIIPVVM
Sbjct: 15 VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 60
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.8 bits (44), Expect = 2.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 126 YFTGPKNSDDYLHTLTPRNYF 64
YF K+S YLHT+T N F
Sbjct: 91 YFYNGKHS--YLHTITSPNKF 109
Score = 20.2 bits (40), Expect = 6.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 172 KVHRLDFRPFFLNVGVFY 119
+ R+ F FFL + VFY
Sbjct: 425 RASRIVFPLFFLAINVFY 442
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.8 bits (44), Expect = 2.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 280 PHHRHGGNT 254
PHH+HG +T
Sbjct: 334 PHHQHGNHT 342
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 2.7
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -2
Query: 126 YFTGPKNSDDYLHTLTPRNYFSTDKYGPSFADSIEWVI*PSC 1
+F K S Y H T N F + S SI I SC
Sbjct: 99 FFVNEKQS--YFHIATTSNEFIRIHHSGSITRSIRLTITASC 138
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 2.7
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -2
Query: 126 YFTGPKNSDDYLHTLTPRNYFSTDKYGPSFADSIEWVI*PSC 1
+F K S Y H T N F + S SI I SC
Sbjct: 99 FFVNEKQS--YFHIATTSNEFIRIHHSGSITRSIRLTITASC 138
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.4 bits (43), Expect = 2.7
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = -2
Query: 126 YFTGPKNSDDYLHTLTPRNYFSTDKYGPSFADSIEWVI*PSC 1
+F K S Y H T N F + S SI I SC
Sbjct: 38 FFVNEKQS--YFHIATTSNEFIRIHHSGSITRSIRLTITASC 77
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.0 bits (42), Expect = 3.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 244 LGCAICSTKGAEDDGRRRPHN 182
L C + +T+GA+D R P +
Sbjct: 308 LHCNMENTEGADDASERNPRS 328
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.2 bits (40), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 195 RLPSSSAPLVLHMAQPSQAPVLPP 266
++ SS + VL + QAP +PP
Sbjct: 1480 KIGSSPSSPVLSVRTQGQAPGIPP 1503
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.2 bits (40), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 195 RLPSSSAPLVLHMAQPSQAPVLPP 266
++ SS + VL + QAP +PP
Sbjct: 1476 KIGSSPSSPVLSVRTQGQAPGIPP 1499
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 20.2 bits (40), Expect = 6.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 233 GTAKSGTGIAAMAVMRP 283
GTAK G MAV+ P
Sbjct: 547 GTAKMGPSYDPMAVVSP 563
>DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate
receptor protein.
Length = 322
Score = 19.8 bits (39), Expect = 8.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 245 SGTGIAAMAVMRPEQIMKSIIPVVM 319
+G +A + RP+ ++K P+VM
Sbjct: 21 AGQVLAGSSSPRPKPLLKKEYPLVM 45
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,251
Number of Sequences: 438
Number of extensions: 2294
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6844365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
- SilkBase 1999-2023 -