Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C24
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    48   6e-07
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    31   0.094
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   1.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   2.7  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   8.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   8.2  
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    25   8.2  
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    25   8.2  

>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 25/70 (35%), Positives = 38/70 (54%)
 Frame = +1

Query: 271 NLDIEVEMYIQKVTELDKNVLQWAIDLTERNMRSLYETCAWGWNSERKMAEMTDESAWYL 450
           NL + VE+Y      L+K +LQ   +L ++NM +LY   ++GW+   K+ EM  E   Y+
Sbjct: 33  NLGVWVEIY----HHLEKGLLQQCFNLVKKNMEALYRQSSFGWDDSEKLKEMEMEKLEYI 88

Query: 451 IAKEKTGTNL 480
              EKT   L
Sbjct: 89  CIFEKTSKKL 98


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 31.1 bits (67), Expect = 0.094
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 106 INMGXXXXXXXXXXXEKRQARKLEQRRIADGMSLVTSAKNLKDLPSLCKELM 261
           +N G           + +   K  QR++  G+S+  S  NL+D P+L    M
Sbjct: 85  VNNGSNSVNGASHDLDSKDVDKQHQRKMFPGLSIPNSTNNLRDRPALMDNAM 136


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 389 AHVSYKLLIFLSVKSIAH*RTFLSSSVTFCMYISTSMSRLLYTISSLHSEGKSFKFL 219
           AHVS  +   +SVK       F+S S+ F +Y      + +  +SSL +  K+ K+L
Sbjct: 466 AHVSQIMFNNMSVKWAVATMAFISISIPFIIYTFYFFGQRIRALSSL-TGNKALKYL 521


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
 Frame = -1

Query: 326 FLSSSVTFCMYISTSMSR-----LLYTISSLH----SEGKSFKFLADVTSDIPS 192
           FLS SVT+ + +S +M++     LL T+S L+    S G    +++ +  D+PS
Sbjct: 166 FLSRSVTYSISLSLTMNKHQGHSLLQTVSGLNYHTLSVGTGLSYVSLIIFDLPS 219


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = -1

Query: 485 KARFVPVFSLAMRYHADSSVISAIFRSLFHPQAHVSYKLLIFLSVKSIAH*RTFLSSSVT 306
           KAR++ +F   +RY      +  +FR L     +  Y   +F   K       FL + + 
Sbjct: 251 KARWIEIFGKDIRYRTCLGFLVMLFRELIGNNYYFYYATQVF---KGTGMTDIFLPAVIL 307

Query: 305 FCMYISTSMSRLLYTISSL 249
             +   T+    LYTI +L
Sbjct: 308 GAINFGTTFG-ALYTIDNL 325


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 198 SISYTTLFKFSSLPLF---FVFVYVGNCFF 118
           +IS+T   +  ++ LF   FVF Y+ NCFF
Sbjct: 61  AISFTEKCEKYNISLFDSTFVFGYIVNCFF 90


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 221  LADVTSDIPSAIRRCSSFLACRFSLFLFMLVIVFLPMFIRIK*Y 90
            LA +  ++PS+  R S+ +A  ++  L +++    P+F+ I  Y
Sbjct: 1405 LASIIVNVPSSENRLSTLMANFYAFSLTVMMKPTHPLFVGINRY 1448


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +1

Query: 274 LDIEVEMYIQKVTELDKNVLQWAIDLTERNMRSLYETCAWGWNSE 408
           +++  E+ +  + ++DKN     I++    +RSL E  + G + +
Sbjct: 369 VEVATEIVLTSLLKIDKNYFHQQINMLRERVRSLSEPESLGLDQQ 413


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 192 SYTTLFKFSSLPLFFVFVYVGNCFFAHVYTNKVI 91
           SY     F S PLF  + ++  CFF  V   K I
Sbjct: 234 SYLKKSNFPSPPLFTAWTWIKPCFFNFVILLKRI 267


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +1

Query: 157 RQARKLEQRRIADGMS---LVTSAKNLKDLPSLCKELMVYNNLDIEVEMYIQKVTELDKN 327
           RQ R++ + R+   +S    + S K+            VY  LD   E+YI  +T L  N
Sbjct: 19  RQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQPLD---ELYIVLITNLQSN 75

Query: 328 VLQWAIDLTERNMRSLYETCAWGWNSERKMAEMTDE 435
           +LQ   D+   ++ S   T       ER++ E   E
Sbjct: 76  ILQ---DIDTLHLLSQVVTSICSSLEEREILEYAFE 108


>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 239 GKSFKFLADVTSDIPSAIRR 180
           GK F+FL  +T++ PSAI R
Sbjct: 60  GKPFQFLGYLTNEKPSAIFR 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,305
Number of Sequences: 5004
Number of extensions: 41271
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)