Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C24
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125963-5|AAK95886.1| 228|Caenorhabditis elegans Hypothetical ... 39 0.002
AC024202-10|AAF36032.1| 327|Caenorhabditis elegans Hypothetical... 31 0.45
AF016657-15|AAB93658.1| 257|Caenorhabditis elegans Hypothetical... 29 1.4
AF077530-2|AAC26265.1| 436|Caenorhabditis elegans Hypothetical ... 29 2.4
Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z35719-2|CAA84799.2| 715|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF025472-6|AAB71077.1| 441|Caenorhabditis elegans Hypothetical ... 27 7.4
AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical ... 27 7.4
Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical p... 27 9.8
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 27 9.8
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 27 9.8
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 27 9.8
AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical... 27 9.8
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 27 9.8
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 27 9.8
AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.8
AF022980-1|AAG24194.1| 346|Caenorhabditis elegans Serpentine re... 27 9.8
>AF125963-5|AAK95886.1| 228|Caenorhabditis elegans Hypothetical
protein Y38A10A.7 protein.
Length = 228
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 310 TELDKNVLQWAIDLTERNMRSLYETCAWGWNSERKMAEMTDESAWYLIAKEKTGTNLAFS 489
T L +W L + NM +Y WG++ K E+ ++ ++IAK G + ++
Sbjct: 75 THLSDEDFEWVFSLFKENMYDMYHKSQWGYDENSKRNELRATTSRFIIAKNSKGDKIGYT 134
>AC024202-10|AAF36032.1| 327|Caenorhabditis elegans Hypothetical
protein Y71H2B.3 protein.
Length = 327
Score = 31.1 bits (67), Expect = 0.45
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +1
Query: 211 TSAKNLKDLPSLCKELMVYNNLDIEVEMYIQKVTELDKNVLQWAIDLTERNMRSLYETCA 390
T +NLK+ P L E + L+ + K+ EL A+ + E+N+R LY T
Sbjct: 131 TEEQNLKEKPKLAVEEIRRLKLERHKKKQELKMAELRIQKQLEAVSIDEQNLRELYITQL 190
Query: 391 WGWNSERKMAEM 426
W SER E+
Sbjct: 191 LFW-SERCYEEL 201
>AF016657-15|AAB93658.1| 257|Caenorhabditis elegans Hypothetical
protein C16C4.14 protein.
Length = 257
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 250 KELMVYNNLDIEVEMYIQKVTELDKNVLQWAIDLTERNMRSLYETCAWGWNSERKMAEMT 429
K+ + +++D+E+ + I +TEL + + T +NM S+ E + + + +
Sbjct: 73 KDYVTNDSIDVEIRVKIINITELPCTEKTFVLSHTVKNMSSIKEGEEYFSDIQTRF---- 128
Query: 430 DESAWYLIAKEKTGTNLAF 486
WYL K + G N F
Sbjct: 129 -NIPWYLQVKRRDGFNGLF 146
>AF077530-2|AAC26265.1| 436|Caenorhabditis elegans Hypothetical
protein C40D2.2 protein.
Length = 436
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 250 KELMVYNNLDIEVEMYIQKVTELDKNVLQWAIDLTERNMRSLYE 381
K+ + ++D+EV + I ++TEL + + T +NM S+ E
Sbjct: 249 KDYVTNGSIDVEVHVKIIQITELSCQEKSFVLSHTVKNMSSIEE 292
>Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical
protein R05H5.6 protein.
Length = 337
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 201 HSISYTTLFKFSSLPLFFVFVYVGNCFFAHVYTNKVIFKFKICTFH*NTLF 49
++ISY L+++S ++ F +Y +IFK ++CTF+ N F
Sbjct: 8 NNISYDPLYRYSQFYTLLTSIF---SVFPLLYL--IIFKLRVCTFNDNIKF 53
>Z35719-2|CAA84799.2| 715|Caenorhabditis elegans Hypothetical
protein F17C8.3 protein.
Length = 715
Score = 27.1 bits (57), Expect = 7.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +2
Query: 296 TYKRSLNLTKMFF---NGLLI*QKGI*EVYMRHVLGDGTVNEKWRK*QMNQHGTS*PKKR 466
T+ LNL ++ F LLI + E Y+ HV+G G V +RK ++Q P KR
Sbjct: 64 TFNEFLNLLQVIFPDREDLLIATNRVFERYVNHVIGKGFV--LFRK--LSQKRGCLPFKR 119
Query: 467 LAQTW 481
+ W
Sbjct: 120 RTEDW 124
>AF025472-6|AAB71077.1| 441|Caenorhabditis elegans Hypothetical
protein ZK250.8 protein.
Length = 441
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 271 NLDIEVEMYIQKVTELDKNVLQWAIDLTERNMRSLYE 381
++D+EV + I ++TEL + + T +NM S+ E
Sbjct: 262 SIDVEVHVKIVQITELSCQEKSFVLSHTVKNMSSIEE 298
>AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical
protein Y32H12A.2 protein.
Length = 610
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/99 (18%), Positives = 37/99 (37%)
Frame = +1
Query: 76 NFKFKYHFIRINMGXXXXXXXXXXXEKRQARKLEQRRIADGMSLVTSAKNLKDLPSLCKE 255
NF +KY + E ++ + + A L ++ + E
Sbjct: 290 NFLYKYKLFEFRILGTNDTEKQSKDETEAMKRKRKEDETTQEKINKMASELLEVHPMSLE 349
Query: 256 LMVYNNLDIEVEMYIQKVTELDKNVLQWAIDLTERNMRS 372
+ + +I++ M IQ +TEL +W I+ + +S
Sbjct: 350 FEIECSENIKISMQIQYLTELKVTTAKWHINTDSKLKKS 388
>Z81495-10|CAD57692.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 284 SMSRLLYTISSLHSEGKSFKFLADVTSDIPSAIRR 180
S+S+ L +I+S G+ LADV SD+ ++ R
Sbjct: 41 SLSKRLSSIASSAGGGRRSSLLADVVSDVKDSLFR 75
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 188 IRRCSSFLACRFSLFLFMLVIVFLPM 111
I RC + L FSLF F++V V LP+
Sbjct: 2 IYRCVTGLQIGFSLFSFIIVCVALPI 27
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 188 IRRCSSFLACRFSLFLFMLVIVFLPM 111
I RC + L FSLF F++V V LP+
Sbjct: 23 IYRCVTGLQIGFSLFSFIIVCVALPI 48
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 188 IRRCSSFLACRFSLFLFMLVIVFLPM 111
I RC + L FSLF F++V V LP+
Sbjct: 23 IYRCVTGLQIGFSLFSFIIVCVALPI 48
>AL032644-10|CAD57710.1| 480|Caenorhabditis elegans Hypothetical
protein Y51H1A.1b protein.
Length = 480
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 284 SMSRLLYTISSLHSEGKSFKFLADVTSDIPSAIRR 180
S+S+ L +I+S G+ LADV SD+ ++ R
Sbjct: 41 SLSKRLSSIASSAGGGRRSSLLADVVSDVKDSLFR 75
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 224 FLADVTSDIPSAIRRCSSFLACRFSLFLFMLVIVFLPMFIRIK 96
F ++TS++ + RC A +F + +V+ FLP F+ I+
Sbjct: 433 FFINITSNV--IVFRCFGLFAGVTVIFNYFMVVSFLPAFLLIQ 473
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 224 FLADVTSDIPSAIRRCSSFLACRFSLFLFMLVIVFLPMFIRIK 96
F ++TS++ + RC A +F + +V+ FLP F+ I+
Sbjct: 433 FFINITSNV--IVFRCFGLFAGVTVIFNYFMVVSFLPAFLLIQ 473
>AF022985-5|AAB69974.1| 299|Caenorhabditis elegans Hypothetical
protein T15B7.8 protein.
Length = 299
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -1
Query: 221 LADVTSDIPSAIRRCSSFLACRFSLFLFMLVIVFLPMF 108
+A ++ + I R S L C+FS+ +++I P++
Sbjct: 12 IAFISHTYETLIPRMSRLLNCKFSILALVMIICLTPLY 49
>AF022980-1|AAG24194.1| 346|Caenorhabditis elegans Serpentine
receptor, class h protein36 protein.
Length = 346
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -2
Query: 325 FCQVQ*PFVCTFLPLCRDYYTPSVLYIVKVNPLNS*RTLQVTFHQLYDAVQ 173
FC + PF F+ + D+Y P + Y V N ++ YD Q
Sbjct: 258 FCCI--PFSVLFITILLDFYIPGITYFVDFLSENHPTVCLISLFLYYDPYQ 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,193,164
Number of Sequences: 27780
Number of extensions: 229216
Number of successful extensions: 727
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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