Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_C23
(293 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L07518-1|AAB61945.1| 505|Homo sapiens mucin protein. 31 0.67
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 29 2.0
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 29 2.0
M13149-1|AAA52694.1| 525|Homo sapiens HRG protein. 25 2.8
BC069574-1|AAH69574.1| 525|Homo sapiens histidine-rich glycopro... 25 2.8
AB005803-1|BAA21613.1| 525|Homo sapiens histidine-rich glycopro... 25 2.8
X15998-1|CAA34128.1| 2409|Homo sapiens protein ( H.sapiens mRNA ... 28 4.7
U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate prote... 28 4.7
BX641036-1|CAE46022.1| 2060|Homo sapiens hypothetical protein pr... 28 4.7
AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate pro... 28 4.7
U28926-1|AAA86528.1| 468|Homo sapiens beta2-chimaerin protein. 27 8.2
U07223-1|AAA16836.1| 466|Homo sapiens beta2-chimaerin protein. 27 8.2
L29126-1|AAA19191.1| 466|Homo sapiens beta2-chimaerin protein. 27 8.2
BC112155-1|AAI12156.1| 468|Homo sapiens chimerin (chimaerin) 2 ... 27 8.2
AK131107-1|BAC85157.1| 597|Homo sapiens FLJ00408 protein protein. 27 8.2
AK022714-1|BAB14198.1| 926|Homo sapiens nent TRAP230 mRNA. pro... 27 8.2
AF399708-1|AAO38813.1| 2145|Homo sapiens TRALPUSH protein. 27 8.2
AC004417-1|AAC06177.1| 175|Homo sapiens unknown protein. 27 8.2
AB046855-1|BAB13461.1| 1435|Homo sapiens KIAA1635 protein protein. 27 8.2
>L07518-1|AAB61945.1| 505|Homo sapiens mucin protein.
Length = 505
Score = 31.1 bits (67), Expect = 0.67
Identities = 24/85 (28%), Positives = 34/85 (40%)
Frame = -1
Query: 260 ASHILPTSEIFLGAEATTSISTTPTALHCPNLLTLQPNSGTAVSTAIIPTTRHFLF*VRT 81
A I PT+ A ++ S + TPT+LH T P +T I P RT
Sbjct: 49 APPITPTTSGTSQAHSSFSTNKTPTSLHSHTSSTHHPEVAPTSTTTITPNPTSTR--TRT 106
Query: 80 DDVNSNFRFMSKQGPPLVPNSCSPG 6
++N S+ PP +S G
Sbjct: 107 PVAHTNSATSSRPPPPFTTHSPPTG 131
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 248 LPTSEIFLGAEATTSISTTPTALHCPNLLT-LQPNSGTAVSTAIIPT 111
LP + G EA++++STT + +L+T L P+SGT ST PT
Sbjct: 11520 LPVAITSPGPEASSAVSTTTISPDMSDLVTSLVPSSGTDTSTT-FPT 11565
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 248 LPTSEIFLGAEATTSISTTPTALHCPNLLT-LQPNSGTAVSTAIIPT 111
LP + G EA++++STT + +L+T L P+SGT ST PT
Sbjct: 3224 LPVAITSPGPEASSAVSTTTISPDMSDLVTSLVPSSGTDTSTT-FPT 3269
>M13149-1|AAA52694.1| 525|Homo sapiens HRG protein.
Length = 525
Score = 24.6 bits (51), Expect(2) = 2.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 213 HHLHIYHPHC 184
HH H +HPHC
Sbjct: 399 HHPHGHHPHC 408
Score = 23.0 bits (47), Expect(2) = 2.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -3
Query: 243 HQRNLSWSRSHHLHIYHPH 187
H + HH H +HPH
Sbjct: 354 HHSHEQHPHGHHPHAHHPH 372
>BC069574-1|AAH69574.1| 525|Homo sapiens histidine-rich
glycoprotein protein.
Length = 525
Score = 24.6 bits (51), Expect(2) = 2.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 213 HHLHIYHPHC 184
HH H +HPHC
Sbjct: 399 HHPHGHHPHC 408
Score = 23.0 bits (47), Expect(2) = 2.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -3
Query: 243 HQRNLSWSRSHHLHIYHPH 187
H + HH H +HPH
Sbjct: 354 HHSHEQHPHGHHPHAHHPH 372
>AB005803-1|BAA21613.1| 525|Homo sapiens histidine-rich
glycoprotein protein.
Length = 525
Score = 24.6 bits (51), Expect(2) = 2.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 213 HHLHIYHPHC 184
HH H +HPHC
Sbjct: 399 HHPHGHHPHC 408
Score = 23.0 bits (47), Expect(2) = 2.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Frame = -3
Query: 243 HQRNLSWSRSHHLHIYHPH 187
H + HH H +HPH
Sbjct: 354 HHSHEQHPHGHHPHAHHPH 372
>X15998-1|CAA34128.1| 2409|Homo sapiens protein ( H.sapiens mRNA for
the chondroitin sulphate proteoglycan versican, V1
splice-variant; precursor peptide. ).
Length = 2409
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 218 EATTSISTTPTALHCPNLLTLQPNSGTAVSTAIIP 114
+ TS ST PT++H ++ + S T VST+ P
Sbjct: 979 DTQTSPSTVPTSVHISHISDSEGPSSTMVSTSAFP 1013
>U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate
proteoglycan versican V0 splice-variant precursor peptide
protein.
Length = 3396
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 218 EATTSISTTPTALHCPNLLTLQPNSGTAVSTAIIP 114
+ TS ST PT++H ++ + S T VST+ P
Sbjct: 1966 DTQTSPSTVPTSVHISHISDSEGPSSTMVSTSAFP 2000
>BX641036-1|CAE46022.1| 2060|Homo sapiens hypothetical protein
protein.
Length = 2060
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 218 EATTSISTTPTALHCPNLLTLQPNSGTAVSTAIIP 114
+ TS ST PT++H ++ + S T VST+ P
Sbjct: 630 DTQTSPSTVPTSVHISHISDSEGPSSTMVSTSAFP 664
>AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate
proteoglycan 2 (versican) variant protein.
Length = 3410
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 218 EATTSISTTPTALHCPNLLTLQPNSGTAVSTAIIP 114
+ TS ST PT++H ++ + S T VST+ P
Sbjct: 1980 DTQTSPSTVPTSVHISHISDSEGPSSTMVSTSAFP 2014
>U28926-1|AAA86528.1| 468|Homo sapiens beta2-chimaerin protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 174 PKFVNTPAKFWNRRFHGYYSNHQTFSILG 88
P+ V K++ R FHG S Q +LG
Sbjct: 46 PREVENRPKYYGREFHGIISREQADELLG 74
>U07223-1|AAA16836.1| 466|Homo sapiens beta2-chimaerin protein.
Length = 466
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 174 PKFVNTPAKFWNRRFHGYYSNHQTFSILG 88
P+ V K++ R FHG S Q +LG
Sbjct: 44 PREVENRPKYYGREFHGIISREQADELLG 72
>L29126-1|AAA19191.1| 466|Homo sapiens beta2-chimaerin protein.
Length = 466
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 174 PKFVNTPAKFWNRRFHGYYSNHQTFSILG 88
P+ V K++ R FHG S Q +LG
Sbjct: 44 PREVENRPKYYGREFHGIISREQADELLG 72
>BC112155-1|AAI12156.1| 468|Homo sapiens chimerin (chimaerin) 2
protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 174 PKFVNTPAKFWNRRFHGYYSNHQTFSILG 88
P+ V K++ R FHG S Q +LG
Sbjct: 46 PREVENRPKYYGREFHGIISREQADELLG 74
>AK131107-1|BAC85157.1| 597|Homo sapiens FLJ00408 protein protein.
Length = 597
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 225 WSRSHHLHIYHPHCTPLPKFVNTP 154
W H L + H TP+PK ++TP
Sbjct: 153 WLHMHRLVLILEHDTPIPKHLHTP 176
>AK022714-1|BAB14198.1| 926|Homo sapiens nent TRAP230 mRNA.
protein.
Length = 926
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 240 QRNLSWSRSHHLHIYHPHCTPLPK 169
+R + + HHL +YH H P P+
Sbjct: 861 RRVIKYEEQHHLLLYHTHPMPKPR 884
>AF399708-1|AAO38813.1| 2145|Homo sapiens TRALPUSH protein.
Length = 2145
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 240 QRNLSWSRSHHLHIYHPHCTPLPK 169
+R + + HHL +YH H P P+
Sbjct: 1698 RRVIKYEEQHHLLLYHTHPMPKPR 1721
>AC004417-1|AAC06177.1| 175|Homo sapiens unknown protein.
Length = 175
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 174 PKFVNTPAKFWNRRFHGYYSNHQTFSILG 88
P+ V K++ R FHG S Q +LG
Sbjct: 29 PREVENRPKYYGREFHGIISREQADELLG 57
>AB046855-1|BAB13461.1| 1435|Homo sapiens KIAA1635 protein protein.
Length = 1435
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 240 QRNLSWSRSHHLHIYHPHCTPLPK 169
+R + + HHL +YH H P P+
Sbjct: 988 RRVIKYEEQHHLLLYHTHPMPKPR 1011
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,183,867
Number of Sequences: 237096
Number of extensions: 967293
Number of successful extensions: 1978
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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