Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_C22
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    33   0.024
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   0.90 
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical pr...    27   2.7  
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    26   3.6  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    26   3.6  
U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical pr...    26   3.6  
U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical pr...    26   3.6  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    26   3.6  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    26   3.6  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    26   3.6  
AC024763-6|AAO12403.1|  603|Caenorhabditis elegans Calpain famil...    25   6.3  
AC024763-5|AAO12402.1|  716|Caenorhabditis elegans Calpain famil...    25   6.3  
Z68114-3|CAA92153.1|  149|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 50  IGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMG 178
           +G  L PP  ++  T   AR     +P  P+ PVAP +PV +G
Sbjct: 181 VGVCLCPPELIQEGTVCVARTIYGVVPP-PVIPVAPVIPVALG 222


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +2

Query: 50   IGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAAKEAL 217
            I T   P P     +      A E   A P       +P  +  HP A+HAAK  +
Sbjct: 1523 IVTPQAPQPTAAATSASTGPIAPEPTTAAPTTTETTPLPPSLAPHPPAAHAAKTVI 1578


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 104 ARAAEERLPAGPIAPVAPTVPV 169
           A A+ +  P  P APVAP VP+
Sbjct: 717 AEASSDPAPPVPAAPVAPVVPI 738



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 125 LPAGPIAPVAPTVPV 169
           +PA P+APV P VP+
Sbjct: 727 VPAAPVAPVVPIVPI 741


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 104 ARAAEERLPAGPIAPVAPTVPV 169
           A A+ +  P  P APVAP VP+
Sbjct: 717 AEASSDPAPPVPAAPVAPVVPI 738



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 125 LPAGPIAPVAPTVPV 169
           +PA P+APV P VP+
Sbjct: 727 VPAAPVAPVVPIVPI 741


>Z49127-2|CAA88949.1|  245|Caenorhabditis elegans Hypothetical
           protein F13D12.3 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 62  LIPPPCLRRATHVKARAAEERLPA-GPIAPVAPTVPVGMGNHPEA 193
           ++PPP       V     E  +PA GP+AP  P+ P+  G  P A
Sbjct: 142 IVPPP----VPEVSEPVPEPPIPAPGPVAPPTPSGPLFGGVEPGA 182


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 PAGPIAPVAPTVPVGMGNH 184
           P  P AP A T+P+G  NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 PAGPIAPVAPTVPVGMGNH 184
           P  P AP A T+P+G  NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340


>U42436-3|AAL02471.1|  498|Caenorhabditis elegans Hypothetical
           protein C49H3.6b protein.
          Length = 498

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +2

Query: 59  QLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVP-VGMGNHPEASHAAKEALKSRI 229
           Q  PPP  R          + RLP  P   V   VP + +G+ P +S      + S +
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPV 413


>U42436-2|AAL02470.2|  552|Caenorhabditis elegans Hypothetical
           protein C49H3.6a protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +2

Query: 59  QLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVP-VGMGNHPEASHAAKEALKSRI 229
           Q  PPP  R          + RLP  P   V   VP + +G+ P +S      + S +
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPV 413


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 PAGPIAPVAPTVPVGMGNH 184
           P  P AP A T+P+G  NH
Sbjct: 462 PKDPAAPRASTLPLGSSNH 480


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 PAGPIAPVAPTVPVGMGNH 184
           P  P AP A T+P+G  NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 PAGPIAPVAPTVPVGMGNH 184
           P  P AP A T+P+G  NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340


>AC024763-6|AAO12403.1|  603|Caenorhabditis elegans Calpain family
           protein 4, isoform b protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 110 AAEERLPAGPIAPVAPTVPV 169
           A +  +PA P APVAP  PV
Sbjct: 179 APKPAVPATPKAPVAPVAPV 198



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 128 PAGPIAPVAPTVP 166
           P  P+APVAP +P
Sbjct: 188 PKAPVAPVAPVIP 200


>AC024763-5|AAO12402.1|  716|Caenorhabditis elegans Calpain family
           protein 4, isoform a protein.
          Length = 716

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 110 AAEERLPAGPIAPVAPTVPV 169
           A +  +PA P APVAP  PV
Sbjct: 179 APKPAVPATPKAPVAPVAPV 198



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 128 PAGPIAPVAPTVP 166
           P  P+APVAP +P
Sbjct: 188 PKAPVAPVAPVIP 200


>Z68114-3|CAA92153.1|  149|Caenorhabditis elegans Hypothetical
           protein F17A2.4 protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 21  HPPSSPSLNGSVPSLFLRHAC 83
           HP +  SLNG     FL+H C
Sbjct: 84  HPQTGFSLNGYCVGPFLKHGC 104


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 71  PPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHP 187
           P   R  +  ++ A     P GP AP A T+P G G+ P
Sbjct: 431 PRWTRSQSRGRSEATRRSPPKGPSAPPAYTLPFG-GSTP 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,644,265
Number of Sequences: 27780
Number of extensions: 97802
Number of successful extensions: 375
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)